View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1311_low_6 (Length: 610)
Name: NF1311_low_6
Description: NF1311
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1311_low_6 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 325; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 30 - 610
Target Start/End: Complemental strand, 1504485 - 1503913
Alignment:
| Q |
30 |
gatatggctctggccctaacccaagagttgt---gactcttgcatggttgtaggagtgggtaagaaaagggaaatagcattagttttcccatactttaga |
126 |
Q |
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| T |
1504485 |
gatatggctctggccctaacccaagagttgttgtgactcttgcatgattgtaggagtgggtaagaaaagggaaatagcattagttttcccatactttaga |
1504386 |
T |
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| Q |
127 |
aaaagagaaattatacggtctcccttnnnnnnngaaatttta-----ctttctaatgtacgtacggaacggtgcagttttgttgaaaaacaatataaaca |
221 |
Q |
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| T |
1504385 |
aaa-gaaaaattatacggtctcccttaaaaaaagaaattatattatactttctaatgtacgtacggaacggtgcagtttagttgaaaaacaatataaacc |
1504287 |
T |
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| Q |
222 |
tgtattttccagaaaggaaaagggaaagcaaagatagattaatgtttccaaaaattttatttctaaacagctcaatttttgttaagataaccatttaacc |
321 |
Q |
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| T |
1504286 |
tgtattttcctgaaaggaaaag------caaagatagattaatgtttccaaaaattttacttctgaacagctcaatttt-gttaagataaccatttaacc |
1504194 |
T |
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| Q |
322 |
taataaaatcaaataattgagcttaaatggttaatgaactccaccatataataannnnnnnaggagaatcttgagtttgattcttgagtgaaatgaatat |
421 |
Q |
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| T |
1504193 |
taataaaatcaaataattgagcttaaatggttaatgaactccaccatataacaaatttttcaggaaaatcttgagttcgatttttgagtgaaatgaatat |
1504094 |
T |
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| Q |
422 |
acgaaccaagctaagcacgtcaacgctatttttgctnnnnnnnnnntagaatatacttttggaaacgacattgataattcatgaactgaattaaatcgag |
521 |
Q |
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| T |
1504093 |
acgaaccaagcg-----cgtcaacgctatttttgctaaaagaaaaatagaatatacttttgaaaacgacattgataattcatgagctgaattaaatcga- |
1504000 |
T |
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| Q |
522 |
ctgctgattcaactcaattccaaaatcattagtcacattcatttcaattcaannnnnnnggttcaattcggtcggttggtttttatgat |
610 |
Q |
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| T |
1503999 |
--gctgattcaactcaattccaaaatcattagtcacattcatttcaattcaatttttttggttcaattcgatcggttggtttttatgat |
1503913 |
T |
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