View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1312-Insertion-1 (Length: 375)
Name: NF1312-Insertion-1
Description: NF1312
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1312-Insertion-1 |
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| [»] chr4 (1 HSPs) |
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| [»] chr8 (1 HSPs) |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 329; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 7 - 375
Target Start/End: Complemental strand, 44499565 - 44499197
Alignment:
| Q |
7 |
agaccgaaccggaacgaacctcacgaacggagcaagactacaaagcaacgccataaaaccttcaaagcaagaagagaaaccacgctcaacaaacaaagag |
106 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||| |
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| T |
44499565 |
agaccgaaccggaacgaacctcacgaacggagcaggactacaaagcaacgccataaaaccttcaatgcaagaagagaaaccacgctgaacaaacaaagag |
44499466 |
T |
|
| Q |
107 |
aagaaactgataaaacctgcacagtgaaaagctagaaaggtaagcttcaagatctggagaatcgaacgaaattggagaacaatcggaggagagaggtgcg |
206 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44499465 |
aagaaactgataaaacctgcgcagtgaaaagctagaaaggtaagcttcaagatctggagaatcgaacgaaattggagaacaatcggaggagagaggtgcg |
44499366 |
T |
|
| Q |
207 |
aatctgagcagttacggaggagaacagagcaaaaccaacgccggaaggagaagcaaggtcacctgtgcgaatctgtccatcaattttctcttcaaaactg |
306 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
44499365 |
aatctgagcagttacggaggagaacagagcaaaaccaacgccgaaaggagaagaaaggtcatctgtgcgaatctgtccatcaattttctcttcaaaacta |
44499266 |
T |
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| Q |
307 |
atcttccttccacgaaagggtcgttctccgttgcgccacgccgccatcatgcaaccaccaccattccta |
375 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
44499265 |
atctcccttccacgaaagggtcgttctccgttgcgccacgccgccgtcatgcaaccaccaccattccta |
44499197 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 316; Significance: 1e-178; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 12 - 375
Target Start/End: Original strand, 24191645 - 24192007
Alignment:
| Q |
12 |
gaaccggaacgaacctcacgaacggagcaagactacaaagcaacgccataaaaccttcaaagcaagaagagaaaccacgctcaacaaacaaagagaagaa |
111 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
24191645 |
gaaccggaacgaacctcacgaacggagcaagactacaaagcaacgccataaaaccttcaaagcaagaagagaaaccacgctgaacaaacaaagagaagaa |
24191744 |
T |
|
| Q |
112 |
actgataaaacctgcacagtgaaaagctagaaaggtaagcttcaagatctggagaatcgaacgaaattggagaacaatcggaggagagaggtgcgaatct |
211 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
24191745 |
actgataaaacctgcgcagtgaaaagctagaaaggtaagcttcaagatctggagaatcgaccgaaattggagaacaatcggaggagagaggtgcgaatct |
24191844 |
T |
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| Q |
212 |
gagcagttacggaggagaacagagcaaaaccaacgccggaaggagaagcaaggtcacctgtgcgaatctgtccatcaattttctcttcaaaactgatctt |
311 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24191845 |
aagcagttacggaggagaatggagcaaaaccaacgccggaaggagaagaaaggtctcctgtgcgaatctgtccatcaattttctcttcaaaactgatctc |
24191944 |
T |
|
| Q |
312 |
ccttccacgaaagggtcgttctccgttgcgccacgccgccatcatgcaaccaccaccattccta |
375 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||| |
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| T |
24191945 |
ccttccacgaaagggtcgttctccgttgcgccacgccgccgtcatgc-accaccaccattccta |
24192007 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 265; Significance: 1e-148; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 7 - 375
Target Start/End: Complemental strand, 44376315 - 44375947
Alignment:
| Q |
7 |
agaccgaaccggaacgaacctcacgaacggagcaagactacaaagcaacgccataaaaccttcaaagcaagaagagaaaccacgctcaacaaacaaagag |
106 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||| | | |||| |
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| T |
44376315 |
agaccgaaccggaacgaacctcacgaacagagcaagactacaaagcaacgccataaaaccttcaaagcatgaagagaaaccacgctggacagatagagag |
44376216 |
T |
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| Q |
107 |
aagaaactgataaaacctgcacagtgaaaagctagaaaggtaagcttcaagatctggagaatcgaacgaaattggagaacaatcggaggagagaggtgcg |
206 |
Q |
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||||| |||||||||||||| ||| ||||||| ||||||||||||||| ||||| |||||||||| ||||||||||||||| |||||||||||||||||| |
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| T |
44376215 |
aagaagctgataaaacctgcgcagggaaaagccagaaaggtaagcttcgagatccggagaatcgaccgaaattggagaacagtcggaggagagaggtgcg |
44376116 |
T |
|
| Q |
207 |
aatctgagcagttacggaggagaacagagcaaaaccaacgccggaaggagaagcaaggtcacctgtgcgaatctgtccatcaattttctcttcaaaactg |
306 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||| |||| |||||||||||||||||||||| |
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| T |
44376115 |
aatctgagcagttacggaggagaacggagcaaaaccaacgccggaaggagaagaaaggtcacctgtgcgaatatgtcgatcaattttctcttcaaaactg |
44376016 |
T |
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| Q |
307 |
atcttccttccacgaaagggtcgttctccgttgcgccacgccgccatcatgcaaccaccaccattccta |
375 |
Q |
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|||| ||||| |||||||||||||||||||| ||| ||| ||||| |||||||||||||||||| |||| |
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| T |
44376015 |
atctcccttctacgaaagggtcgttctccgtcgcgtcaccccgccgtcatgcaaccaccaccatcccta |
44375947 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 7 - 375
Target Start/End: Complemental strand, 44385182 - 44384814
Alignment:
| Q |
7 |
agaccgaaccggaacgaacctcacgaacggagcaagactacaaagcaacgccataaaaccttcaaagcaagaagagaaaccacgctcaacaaacaaagag |
106 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||| | | |||| |
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| T |
44385182 |
agaccgaaccggaacgaacctcacgaacagagcaagactacaaagcaacgccataaaaccttcaaagcatgaagagaaaccacgctggacagatagagag |
44385083 |
T |
|
| Q |
107 |
aagaaactgataaaacctgcacagtgaaaagctagaaaggtaagcttcaagatctggagaatcgaacgaaattggagaacaatcggaggagagaggtgcg |
206 |
Q |
| |
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||||| |||||||||||||| ||| ||||||| ||||||||||||||| ||||| |||||||||| ||||||||||||||| |||||||||||||||||| |
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| T |
44385082 |
aagaagctgataaaacctgcgcagggaaaagccagaaaggtaagcttcgagatccggagaatcgaccgaaattggagaacagtcggaggagagaggtgcg |
44384983 |
T |
|
| Q |
207 |
aatctgagcagttacggaggagaacagagcaaaaccaacgccggaaggagaagcaaggtcacctgtgcgaatctgtccatcaattttctcttcaaaactg |
306 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||| |||| |||||||||||||||||||||| |
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| T |
44384982 |
aatctgagcagttacggaggagaacggagcaaaaccaacgccggaaggagaagaaaggtcacctgtgcgaatatgtcgatcaattttctcttcaaaactg |
44384883 |
T |
|
| Q |
307 |
atcttccttccacgaaagggtcgttctccgttgcgccacgccgccatcatgcaaccaccaccattccta |
375 |
Q |
| |
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|||| ||||| |||||||||||||||||||| ||| ||| ||||| |||||||||||||||||| |||| |
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| T |
44384882 |
atctcccttctacgaaagggtcgttctccgtcgcgtcaccccgccgtcatgcaaccaccaccatcccta |
44384814 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 18 - 98
Target Start/End: Complemental strand, 27184348 - 27184268
Alignment:
| Q |
18 |
gaacgaacctcacgaacggagcaagactacaaagcaacgccataaaaccttcaaagcaagaagagaaaccacgctcaacaa |
98 |
Q |
| |
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|||||||||||| ||| |||| || ||||||||||||| ||||||||||||| ||||||||||||||||||| |||| |
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| T |
27184348 |
gaacgaacctcatgaatggagaaatactacaaagcaacatgggaaaaccttcaaagaaagaagagaaaccacgctcgacaa |
27184268 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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