View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1312_high_1 (Length: 573)
Name: NF1312_high_1
Description: NF1312
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1312_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 255; Significance: 1e-141; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 255; E-Value: 1e-141
Query Start/End: Original strand, 43 - 420
Target Start/End: Original strand, 28486205 - 28486581
Alignment:
| Q |
43 |
cactgatttatatatgtttgacacatttt-tgtattgaatgactctaaatgcagtgaagagacttcttctaagaaggcaagggaagatgatgtttttggg |
141 |
Q |
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| T |
28486205 |
cactaatttatatatgtttgacacattttttgtattgaatgattctaaatgcagtgaagagacttcttctaagaaggcaggggaagatgatatttttggg |
28486304 |
T |
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| Q |
142 |
gtaatttcagctgaggttgaggaatttataaattttggagagggcaagagatcaagaaaggt---atgtacacatgttcaatcacaattatgcaacattt |
238 |
Q |
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| T |
28486305 |
gtaaacccagctgaggttgaggaatttataaattttggagagggcaagagaccaagaaaggtatgatgtacacatgttcaatcacaattatgcaacattt |
28486404 |
T |
|
| Q |
239 |
tgataagagagtcgccagtgcagcattcattaattcctttaagaaaggtagattgtaagttttagaatctagcaatggattgggcgttagtgaatgaggc |
338 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||| |||| |||||||||||||| ||||||||||| ||||| || |||| |||||| |
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| T |
28486405 |
tgataagagagttgccagtgcagcattcattaattcctttaag---tgtagtttgtaagttttaga--ctagcaatggaatgggcattggtgattgaggc |
28486499 |
T |
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| Q |
339 |
atttggtatattataatttttggaagaaaactgtttacattcatgcttattagagttatccaatcctagcttcttctagaga |
420 |
Q |
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| T |
28486500 |
atttgctatattataatttttggaagaaaactgtttacattcatgccgattacagtcatccaatcctagcttcttctagaga |
28486581 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 43 - 298
Target Start/End: Original strand, 28467722 - 28467977
Alignment:
| Q |
43 |
cactgatttatatatgtttgacacatttttgtattgaatgactctaaatgcagtgaagagacttcttctaagaaggcaagggaagatgatgtttttgggg |
142 |
Q |
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| T |
28467722 |
cactgatttatatatgttcgacacatttttgtattgaatgactctaaatgcagtgaagagacttcttctaagaaggcaagggaagatgatgtttttgggg |
28467821 |
T |
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| Q |
143 |
taatttcagctgaggttgaggaatttataaattttggagagggcaagagatcaagaaaggtatgtacacatgttcaatcacaattatgcaacattttgat |
242 |
Q |
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| T |
28467822 |
taatttcagctgaggttgaggaatttataaattttggagagggcaagagatcaagaaaggtatgtacacatgttcaatcacaattatgcatcattttgat |
28467921 |
T |
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| Q |
243 |
aagagagtcgccagtgcagcattcattaattcctttaagaaaggtagattgtaagt |
298 |
Q |
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| T |
28467922 |
aagagagtcgtcagtgcagcattcattaattcctttaagaaaggtagattgtaagt |
28467977 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 128; E-Value: 7e-66
Query Start/End: Original strand, 293 - 420
Target Start/End: Original strand, 28468814 - 28468941
Alignment:
| Q |
293 |
gtaagttttagaatctagcaatggattgggcgttagtgaatgaggcatttggtatattataatttttggaagaaaactgtttacattcatgcttattaga |
392 |
Q |
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| T |
28468814 |
gtaagttttagaatctagcaatggattgggcgttagtgaatgaggcatttggtatattataatttttggaagaaaactgtttacattcatgcttattaga |
28468913 |
T |
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| Q |
393 |
gttatccaatcctagcttcttctagaga |
420 |
Q |
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| T |
28468914 |
gttatccaatcctagcttcttctagaga |
28468941 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 50 - 144
Target Start/End: Original strand, 30685009 - 30685103
Alignment:
| Q |
50 |
ttatatatgtttgacacatttttgtattgaatgactctaaatgcagtgaagagacttcttctaagaaggcaagggaagatgatgtttttggggta |
144 |
Q |
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| T |
30685009 |
ttatatatgtttgacacatttttgtattgaatgactcgaaatgcagtgaagagacttcttctaagaaggcaagggaagatgatatttctggggta |
30685103 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 502 - 566
Target Start/End: Original strand, 28469023 - 28469087
Alignment:
| Q |
502 |
agatgcaaaatctttactagtttactttcacgcctctttctttgtaagtttttggtcctttgttt |
566 |
Q |
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||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||| |
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| T |
28469023 |
agatgcaaaatctttactagtttactttcacacccctttctttgtaagtttttggtcctttgttt |
28469087 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 511 - 563
Target Start/End: Original strand, 28486676 - 28486728
Alignment:
| Q |
511 |
atctttactagtttactttcacgcctctttctttgtaagtttttggtcctttg |
563 |
Q |
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||||||||||||||||||| | ||||||| |||||||| ||||||||||||| |
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| T |
28486676 |
atctttactagtttacttttatacctctttttttgtaagcttttggtcctttg |
28486728 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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