View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1312_high_10 (Length: 359)
Name: NF1312_high_10
Description: NF1312
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1312_high_10 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 42 - 330
Target Start/End: Complemental strand, 24225284 - 24224991
Alignment:
| Q |
42 |
tgcatcctcaaacaaataaaccaagaacaagagcgatccaaagacaaaaactcaaacgaaaagaacacccatacacatcccaaaacatgacaaaactata |
141 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24225284 |
tgcatcctcaaacaaataaaccaagaacaagagcgatccaaagacaaaaactcaaacaaaaagaacacccatacacatcccaaaacatgacaaaactata |
24225185 |
T |
|
| Q |
142 |
catatcaaccaacaaccggagcaaaccgaacaaacattaaccaatgacgacaagcatcaaag-----aaacaagtaaataccacggtgaaagaataactt |
236 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||| |
|
|
| T |
24225184 |
catatcaaccaacaaccggagcagaccgaacaaacattaaccaatgacgacaagcatcaaagaaattaaacaagtaaataccatggtgaaagaataactt |
24225085 |
T |
|
| Q |
237 |
ctacgtctctaaaatccaaaatattgatgattgatgcaattaatttcaaaacgtgctcaaaaccatccaaacaatatgcacaccgtgaatctaa |
330 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24225084 |
ctacgtctctaaaatccaaaatattgatgattgatgcaattaatttcaaaacgtgctcaaaaccatccaaacaatatgcacaccgtgaatctaa |
24224991 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 16524 times since January 2019
Visitors: 3768