View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1312_high_12 (Length: 329)

Name: NF1312_high_12
Description: NF1312
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1312_high_12
NF1312_high_12
[»] chr6 (5 HSPs)
chr6 (43-298)||(26228261-26228516)
chr6 (102-195)||(9345439-9345532)
chr6 (102-229)||(16262098-16262224)
chr6 (159-243)||(21082705-21082789)
chr6 (63-98)||(15593862-15593897)
[»] chr3 (7 HSPs)
chr3 (43-298)||(22805732-22805988)
chr3 (43-298)||(21950483-21950738)
chr3 (69-298)||(19243655-19243884)
chr3 (43-184)||(3575679-3575820)
chr3 (102-195)||(22801006-22801099)
chr3 (158-216)||(7465218-7465277)
chr3 (168-243)||(381100-381174)
[»] chr4 (9 HSPs)
chr4 (43-298)||(28086475-28086729)
chr4 (104-243)||(14282995-14283134)
chr4 (102-229)||(10668946-10669073)
chr4 (102-229)||(10701973-10702100)
chr4 (102-229)||(10882585-10882712)
chr4 (102-229)||(10915743-10915870)
chr4 (102-216)||(11169684-11169799)
chr4 (102-229)||(14817315-14817443)
chr4 (63-91)||(22674735-22674763)
[»] chr1 (5 HSPs)
chr1 (43-295)||(43516541-43516793)
chr1 (79-298)||(24057806-24058025)
chr1 (102-249)||(23308191-23308339)
chr1 (101-207)||(24090356-24090463)
chr1 (113-216)||(10215804-10215912)
[»] chr7 (4 HSPs)
chr7 (104-298)||(39888610-39888803)
chr7 (104-278)||(3083402-3083576)
chr7 (95-298)||(15561716-15561919)
chr7 (79-196)||(11245494-11245611)
[»] chr2 (7 HSPs)
chr2 (104-298)||(16878411-16878605)
chr2 (104-298)||(16990544-16990738)
chr2 (104-255)||(22827516-22827668)
chr2 (102-195)||(29791043-29791137)
chr2 (102-195)||(6689-6782)
chr2 (102-195)||(21338587-21338681)
chr2 (113-189)||(19064-19140)
[»] scaffold0042 (1 HSPs)
scaffold0042 (102-298)||(9961-10158)
[»] chr8 (7 HSPs)
chr8 (79-292)||(24539896-24540109)
chr8 (82-195)||(25239299-25239412)
chr8 (102-193)||(21539425-21539516)
chr8 (102-196)||(25188793-25188888)
chr8 (123-187)||(30613627-30613691)
chr8 (104-229)||(19440678-19440802)
chr8 (104-229)||(19576828-19576952)
[»] chr5 (5 HSPs)
chr5 (49-149)||(29253251-29253351)
chr5 (102-195)||(37984678-37984772)
chr5 (43-98)||(26075403-26075458)
chr5 (63-107)||(21493737-21493781)
chr5 (158-194)||(22752689-22752725)
[»] scaffold0005 (1 HSPs)
scaffold0005 (102-229)||(22268-22396)


Alignment Details
Target: chr6 (Bit Score: 224; Significance: 1e-123; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 43 - 298
Target Start/End: Original strand, 26228261 - 26228516
Alignment:
Q  43 aacaatattatctcagtttattttacggattaatcccgagtggagtaaccccggaagttaatcccttacttgaccgatgaaaacctagctaaggaacatc 142  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||    
T  26228261 aacaatattatctcagtttattttacggattaatcccgagtggagtaaccccgaaagttaatcccttacttgaccgatgaaaacctagctaaggtacatc 26228360  T
Q  143 ggactccctcagttacgtgcgggcctaccttgcggagcgtatcccgttccccttggagaacctctcgtatccccgttggcgtggataactgaaagacacg 242  Q
    |||||||||| || ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  26228361 ggactccctcggtgacgtgcgggcctaccatgcggagcgtatcccgttccccttggagaacctctcgtatcccccttggcgtggataactgaaagacacg 26228460  T
Q  243 atacctaaatcttactttatggtcttgaccatatatattaacttgtcttagtactt 298  Q
    | ||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  26228461 acacctacatcttactttatggtcttgaccatatatattaacttgtcttagtactt 26228516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 102 - 195
Target Start/End: Original strand, 9345439 - 9345532
Alignment:
Q  102 aatcccttacttgaccgatgaaaacctagctaaggaacatcggactccctcagttacgtgcgggcctaccttgcggagcgtatcccgttcccct 195  Q
    |||||| ||| |||||||||||||||||||||||| ||||||||||||||||||  ||||||||||||||||||||||||| |||||| |||||    
T  9345439 aatcccatacatgaccgatgaaaacctagctaaggtacatcggactccctcagtgtcgtgcgggcctaccttgcggagcgtgtcccgtccccct 9345532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 102 - 229
Target Start/End: Original strand, 16262098 - 16262224
Alignment:
Q  102 aatcccttacttgaccgatgaaaacctagctaaggaacatcggactccctcagttacgtgcgggcctaccttgcggagcgtatcccgttccccttg-gag 200  Q
    |||||||||| |||||||||||| ||||||||||| ||||||||||||||||||  |||||||||||||||||| |||||| |||||| ||||| | | |    
T  16262098 aatcccttacatgaccgatgaaa-cctagctaaggtacatcggactccctcagtgtcgtgcgggcctaccttgcagagcgtgtcccgtccccctggcgtg 16262196  T
Q  201 aacctctcgtatccccgttggcgtggata 229  Q
    ||||||| |||||||| ||||||||||||    
T  16262197 aacctcttgtatcccc-ttggcgtggata 16262224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 159 - 243
Target Start/End: Original strand, 21082705 - 21082789
Alignment:
Q  159 gtgcgggcctaccttgcggagcgtatcccgttcccct-tggagaacctctcgtatccccgttggcgtggataactgaaagacacga 243  Q
    ||||||||||||||||||||||||||||||| |||||   | ||| ||||||||| |||  ||| ||||||||| |||||||||||    
T  21082705 gtgcgggcctaccttgcggagcgtatcccgtccccctaacgtgaaactctcgtat-ccctctggagtggataacggaaagacacga 21082789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 63 - 98
Target Start/End: Complemental strand, 15593897 - 15593862
Alignment:
Q  63 ttttacggattaatcccgagtggagtaaccccggaa 98  Q
    ||||| ||||||||||||||||||||||||||||||    
T  15593897 ttttatggattaatcccgagtggagtaaccccggaa 15593862  T

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Target: chr3 (Bit Score: 193; Significance: 1e-105; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 43 - 298
Target Start/End: Original strand, 22805732 - 22805988
Alignment:
Q  43 aacaatattatctcagtttattttacggattaatcccgagtggagtaaccccggaagttaatcccttacttgaccgatgaaaacctagctaaggaacatc 142  Q
    ||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||    
T  22805732 aacaatattatctgagttcattttacggattaatcccgagtggagtaaccccggaagttaatcccttacttgaccgatgaaaacctagctaaagtacatc 22805831  T
Q  143 ggactccctcagttacgtgcgggcctaccttgcggagcgtatcccgttccccttg-gagaacctctcgtatccccgttggcgtggataactgaaagacac 241  Q
    ||||||||||||| || |||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||| ||||||| |||||| |||||||||    
T  22805832 ggactccctcagtgacatgcgggcctaccttgcggagcgtatcacgttccccttgtgagaacctctcgtatcccccttggcgttgataacggaaagacac 22805931  T
Q  242 gatacctaaatcttactttatggtcttgaccatatatattaacttgtcttagtactt 298  Q
    || ||||| |||||||||||||||||||||||||| | |||||||||||||||||||    
T  22805932 gacacctacatcttactttatggtcttgaccatatgtgttaacttgtcttagtactt 22805988  T

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Target: chr3; HSP #2
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 43 - 298
Target Start/End: Original strand, 21950483 - 21950738
Alignment:
Q  43 aacaatattatctcagtttattttacggattaatcccgagtggagtaaccccggaagttaatcccttacttgaccgatgaaaacctagctaaggaacatc 142  Q
    ||||||||||||| |||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  21950483 aacaatattatctgagttcattttacagattaatcccgagtggagtaaccccggaagttaatcccttacttgaccgatgaaaacctagctaaggtacatc 21950582  T
Q  143 ggactccctcagttacgtgcgggcctaccttgcggagcgtatcccgttccccttg-gagaacctctcgtatccccgttggcgtggataactgaaagacac 241  Q
    ||||| |||||   || ||| ||||||||||| |||||||||||||||||||||| ||||||||||||||||||| |||||||||||||| |||||||||    
T  21950583 ggacttcctcaacgacttgcaggcctaccttgtggagcgtatcccgttccccttgtgagaacctctcgtatcccccttggcgtggataacggaaagacac 21950682  T
Q  242 gatacctaaatcttactttatggtcttgaccatatatattaacttgtcttagtactt 298  Q
    || ||||| |||||||||||||||||||||||| |||  | ||||||||||||||||    
T  21950683 gacacctacatcttactttatggtcttgaccatgtatgat-acttgtcttagtactt 21950738  T

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Target: chr3; HSP #3
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 69 - 298
Target Start/End: Original strand, 19243655 - 19243884
Alignment:
Q  69 ggattaatcccgagtggagtaaccccggaagttaatcccttacttgaccgatgaaaacctagctaaggaacatcggactccctcagttacgtgcgggcct 168  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| | ||| |||||||||||| ||||||| ||||    
T  19243655 ggattaatcccgagtggagtaaccccggaagttaatcccttacttgaccgacgaaaacctagctaaggtatatcagactccctcagtgacgtgcgagcct 19243754  T
Q  169 accttgcggagcgtatcccgttccccttg-gagaacctctcgtatccccgttggcgtggataactgaaagacacgatacctaaatcttactttatggtct 267  Q
    ||| ||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||| |  |||||||||| ||||| |||||||||||||||||    
T  19243755 accatgcggagcgtatcccgttccccttgtgagaacctctcgtatcccccttggcgtggatagcataaagacacgacacctacatcttactttatggtct 19243854  T
Q  268 tgaccatatatattaacttgtcttagtactt 298  Q
    |||||||||||  | ||||||||||||||||    
T  19243855 tgaccatatatgat-acttgtcttagtactt 19243884  T

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Target: chr3; HSP #4
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 43 - 184
Target Start/End: Original strand, 3575679 - 3575820
Alignment:
Q  43 aacaatattatctcagtttattttacggattaatcccgagtggagtaaccccggaagttaatcccttacttgaccgatgaaaacctagctaaggaacatc 142  Q
    ||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||    
T  3575679 aacaatattatctgagttcattttacggattaatcccgagtggagtaaccccggaagttaataccttacttgaccgatgaaaacctagctaaggtacatc 3575778  T
Q  143 ggactccctcagttacgtgcgggcctaccttgcggagcgtat 184  Q
    ||||||||||||| ||||||||||||||||||| ||||||||    
T  3575779 ggactccctcagtgacgtgcgggcctaccttgcagagcgtat 3575820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 102 - 195
Target Start/End: Original strand, 22801006 - 22801099
Alignment:
Q  102 aatcccttacttgaccgatgaaaacctagctaaggaacatcggactccctcagttacgtgcgggcctaccttgcggagcgtatcccgttcccct 195  Q
    |||||| |||||  || ||||||||||||| |||| | ||| ||||||||||||  ||||||||||||||||| |||||||||||||| |||||    
T  22801006 aatcccatactttgccaatgaaaacctagcgaaggtatatcagactccctcagtgtcgtgcgggcctaccttgtggagcgtatcccgtccccct 22801099  T

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Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 158 - 216
Target Start/End: Original strand, 7465218 - 7465277
Alignment:
Q  158 cgtgcgggcctaccttgcggagcgtatcccgttcccct-tggagaacctctcgtatcccc 216  Q
    |||||||||||||||||||||||||||| ||| |||||   | |||||||||||||||||    
T  7465218 cgtgcgggcctaccttgcggagcgtatctcgtccccctaacgtgaacctctcgtatcccc 7465277  T

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Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 168 - 243
Target Start/End: Complemental strand, 381174 - 381100
Alignment:
Q  168 taccttgcggagcgtatcccgttcccct-tggagaacctctcgtatccccgttggcgtggataactgaaagacacga 243  Q
    |||||||| ||| |||||||||||||||   | |||||||||||||||||  ||||||||||||| |||||| ||||    
T  381174 taccttgcagagtgtatcccgttcccctaacgtgaacctctcgtatcccc--tggcgtggataacggaaagagacga 381100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 180; Significance: 3e-97; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 43 - 298
Target Start/End: Original strand, 28086475 - 28086729
Alignment:
Q  43 aacaatattatctcagtttattttacggattaatcccgagtggagtaaccccggaagttaatcccttacttgaccgatgaaaacctagctaaggaacatc 142  Q
    ||||| |||||||  ||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  28086475 aacaacattatcttggttcattttacggattaatcccgggtggagtaaccccggaagttaatcccttacttgaccgatgaaaacctagctaaggtacatc 28086574  T
Q  143 ggactccctcagttacgtgcgggcctaccttgcggagcgtatcccgttccccttggagaacctctcgtatccccgttggcgtggataactgaaagacacg 242  Q
    |||||||||| || ||||||||||||||||| ||||||||||||| || ||||||||||||||||||||||||| |||||||||||||| ||||||||||    
T  28086575 ggactccctctgtgacgtgcgggcctaccttacggagcgtatcccatttcccttggagaacctctcgtatcccccttggcgtggataacggaaagacacg 28086674  T
Q  243 atacctaaatcttactttatggtcttgaccatatatattaacttgtcttagtactt 298  Q
    | ||||| ||||||||||||||||||||||||||||  | ||||||||||||||||    
T  28086675 acacctacatcttactttatggtcttgaccatatatgat-acttgtcttagtactt 28086729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 104 - 243
Target Start/End: Complemental strand, 14283134 - 14282995
Alignment:
Q  104 tcccttacttgaccgatgaaaacctagctaaggaacatcggactcc-ctcagttacgtgcgggcctaccttgcggagcgtatcccgttccccttggagaa 202  Q
    |||||||||| |||||||||  | |||||||||  ||||||||||| || | |  ||||| ||||||||||||||||||||||| |||||||||||||||    
T  14283134 tcccttactt-accgatgaattcttagctaaggtgcatcggactcctcttaatgccgtgcaggcctaccttgcggagcgtatcctgttccccttggagaa 14283036  T
Q  203 cctctcgtatccccgttggcgtggataactgaaagacacga 243  Q
    |||||||||||||| |||||||||||||| |||||||||||    
T  14283035 cctctcgtatcccccttggcgtggataacggaaagacacga 14282995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 102 - 229
Target Start/End: Original strand, 10668946 - 10669073
Alignment:
Q  102 aatcccttacttgaccgatgaaaacctagctaaggaacatcggactccctcagttacgtgcgggcctaccttgcggagcgtatcccgttccccttg-gag 200  Q
    ||||||||||  ||||||||||||||||| ||||| ||||||||||||||||||  |||||||| |||||||||||||||| ||| |||||||| | | |    
T  10668946 aatcccttacacgaccgatgaaaacctagataaggtacatcggactccctcagtgtcgtgcgggtctaccttgcggagcgtgtcctgttcccctggcgtg 10669045  T
Q  201 aacctctcgtatccccgttggcgtggata 229  Q
    ||||||| ||||||||  |||||||||||    
T  10669046 aacctcttgtatcccc-ctggcgtggata 10669073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 102 - 229
Target Start/End: Complemental strand, 10702100 - 10701973
Alignment:
Q  102 aatcccttacttgaccgatgaaaacctagctaaggaacatcggactccctcagttacgtgcgggcctaccttgcggagcgtatcccgttccccttg-gag 200  Q
    |||||||||| |||||||||||||||||| ||||| ||||| ||||||||||||  |||||||| |||||||||||||||| ||| |||||||| | | |    
T  10702100 aatcccttacatgaccgatgaaaacctaggtaaggtacatcagactccctcagtgtcgtgcgggtctaccttgcggagcgtgtcctgttcccctggcgtg 10702001  T
Q  201 aacctctcgtatccccgttggcgtggata 229  Q
    ||||||| ||||||||  |||||||||||    
T  10702000 aacctcttgtatcccc-ctggcgtggata 10701973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 102 - 229
Target Start/End: Original strand, 10882585 - 10882712
Alignment:
Q  102 aatcccttacttgaccgatgaaaacctagctaaggaacatcggactccctcagttacgtgcgggcctaccttgcggagcgtatcccgttccccttg-gag 200  Q
    ||||||||||  ||||||||||||||||| ||||| ||||||||||||||||||  |||||||| |||||||||||||||| ||| |||||||| | | |    
T  10882585 aatcccttacacgaccgatgaaaacctagataaggtacatcggactccctcagtgtcgtgcgggtctaccttgcggagcgtgtcctgttcccctggcgtg 10882684  T
Q  201 aacctctcgtatccccgttggcgtggata 229  Q
    ||||||| ||||||||  |||||||||||    
T  10882685 aacctcttgtatcccc-ctggcgtggata 10882712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 102 - 229
Target Start/End: Complemental strand, 10915870 - 10915743
Alignment:
Q  102 aatcccttacttgaccgatgaaaacctagctaaggaacatcggactccctcagttacgtgcgggcctaccttgcggagcgtatcccgttccccttg-gag 200  Q
    |||||||||| |||||||||||||||||| ||||| ||||| ||||||||||||  |||||||| |||||||||||||||| ||| |||||||| | | |    
T  10915870 aatcccttacatgaccgatgaaaacctaggtaaggtacatcagactccctcagtgtcgtgcgggtctaccttgcggagcgtgtcctgttcccctggcgtg 10915771  T
Q  201 aacctctcgtatccccgttggcgtggata 229  Q
    ||||||| ||||||||  |||||||||||    
T  10915770 aacctcttgtatcccc-ctggcgtggata 10915743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 102 - 216
Target Start/End: Original strand, 11169684 - 11169799
Alignment:
Q  102 aatcccttacttgaccgatgaaaacctagctaaggaacatcggactccctcagttacgtgcgggcctaccttgcggagcgtatcccgttccccttg-gag 200  Q
    |||||| ||| ||||| ||||||||||| |||||| |||||||||||| |||||  ||||||| || |||||||||||| | |||||||||||| | | |    
T  11169684 aatcccatacatgacctatgaaaacctaactaaggtacatcggactccttcagtgtcgtgcggacccaccttgcggagcttgtcccgttcccctggtgtg 11169783  T
Q  201 aacctctcgtatcccc 216  Q
    ||||||| ||||||||    
T  11169784 aacctcttgtatcccc 11169799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 102 - 229
Target Start/End: Complemental strand, 14817443 - 14817315
Alignment:
Q  102 aatcccttacttgaccgatgaaaacctagctaaggaacatcggactcc-ctcagttacgtgcgggcctaccttgcggagcgtatcccgttcccct-tgga 199  Q
    |||||| ||| |||||||||||  ||||||||||| |||||||||||| ||| ||  ||||| ||||||||||| ||||||| ||||||||||||  ||     
T  14817443 aatcccatacatgaccgatgaattcctagctaaggtacatcggactcctctcggtgccgtgcaggcctaccttgtggagcgtgtcccgttcccctgaggt 14817344  T
Q  200 gaacctctcgtatccccgttggcgtggata 229  Q
    |||||||| ||||||||  |||||||||||    
T  14817343 gaacctcttgtatcccc-ctggcgtggata 14817315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 63 - 91
Target Start/End: Original strand, 22674735 - 22674763
Alignment:
Q  63 ttttacggattaatcccgagtggagtaac 91  Q
    |||||||||||||||||||||||||||||    
T  22674735 ttttacggattaatcccgagtggagtaac 22674763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 154; Significance: 1e-81; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 43 - 295
Target Start/End: Complemental strand, 43516793 - 43516541
Alignment:
Q  43 aacaatattatctcagtttattttacggattaatcccgagtggagtaaccccggaagttaatcccttacttgaccgatgaaaacctagctaaggaacatc 142  Q
    ||||||||||| | |||| ||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||    
T  43516793 aacaatattatatgagttcattttacagattaatcccgagtggagtaacctcggaagttaatcccttacttgaccgatgaaaacctagctaaggtacatc 43516694  T
Q  143 ggactccctcagttacgtgcgggcctaccttgcggagcgtatcccgttccccttg-gagaacctctcgtatccccgttggcgtggataactgaaagacac 241  Q
     ||||||||||||  |||||||||||||||||||||| ||||| ||||||||||| |||||||| || ||||||| |||| ||||||||| |||||||||    
T  43516693 agactccctcagtggcgtgcgggcctaccttgcggagtgtatctcgttccccttgtgagaacctgtcatatccccattggtgtggataacggaaagacac 43516594  T
Q  242 gatacctaaatcttactttatggtcttgaccatatatattaacttgtcttagta 295  Q
    || || || ||||||||||||||||||||||||||||  | |||||||||||||    
T  43516593 gacacttacatcttactttatggtcttgaccatatatgat-acttgtcttagta 43516541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 79 - 298
Target Start/End: Complemental strand, 24058025 - 24057806
Alignment:
Q  79 cgagtggagtaaccccggaagtt-aatcccttacttgaccgatgaaaacctagctaaggaacatcggactccctcagttacgtgcgggcctaccttgcgg 177  Q
    |||||||||||||||||  |||  |||||||||||||||||||||||| |||||||||| ||||| ||||||||| || ||||||||||||||||| |||    
T  24058025 cgagtggagtaaccccg--agtacaatcccttacttgaccgatgaaaatctagctaaggtacatcagactccctcggtgacgtgcgggcctaccttacgg 24057928  T
Q  178 agcgtatcccgttccccttg-gagaacctctcgtatccccgttggcgtggataactgaaagacacgatacctaaatcttactttatggtcttgaccatat 276  Q
    |||||||| ||||||||| | ||||||||||||||||||  |||| ||||||||| ||||||||||| ||||| |||||||| |||||||||||||||||    
T  24057927 agcgtatctcgttcccctagcgagaacctctcgtatccctcttggtgtggataacggaaagacacgacacctacatcttactctatggtcttgaccatat 24057828  T
Q  277 atattaacttgtcttagtactt 298  Q
    ||  || ||||| |||||||||    
T  24057827 atgatagcttgttttagtactt 24057806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 102 - 249
Target Start/End: Complemental strand, 23308339 - 23308191
Alignment:
Q  102 aatcccttacttgaccgatgaaaacctagctaaggaacatcggactccctcagttacgtgcgggcctaccttgcggagcgtatcccgttccccttg-gag 200  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||| |||| | ||||||| |||||||||||||||||||||||||| |||| | |||    
T  23308339 aatcccttacttgaccgatgaaaacctagctaaggtacatcggactctctcactgacgtgcgagcctaccttgcggagcgtatcccgtttccctggcgag 23308240  T
Q  201 aacctctcgtatccccgttggcgtggataactgaaagacacgataccta 249  Q
    |||||||||||||||| |||||||||||||| ||| ||||||| |||||    
T  23308239 aacctctcgtatcccccttggcgtggataacggaaggacacgacaccta 23308191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 101 - 207
Target Start/End: Complemental strand, 24090463 - 24090356
Alignment:
Q  101 taatcccttacttgaccgatgaaaacctagctaaggaacatcggactccctcagttacgtgcgggcctaccttgcggagcgtatcccgttccccttg-ga 199  Q
    ||||||| ||| |||||||||||||||||||||||  |||||||||||||||||| ||||| | |||  |||||  |||| |||||||||||||| | ||    
T  24090463 taatcccatacatgaccgatgaaaacctagctaagatacatcggactccctcagtgacgtgtgtgccccccttgtagagcttatcccgttcccctggcga 24090364  T
Q  200 gaacctct 207  Q
    ||||||||    
T  24090363 gaacctct 24090356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 113 - 216
Target Start/End: Complemental strand, 10215912 - 10215804
Alignment:
Q  113 tgaccgatgaaaacctagctaaggaacatcggactccctcagttacgtgcgggc----ctaccttgcggagcgtatcccgttccccttg-gagaacctct 207  Q
    |||||||||||  ||||||||||| ||||||||||||||||||  |||||  ||    |  ||||||||||| |||||||||||||| | | ||||||||    
T  10215912 tgaccgatgaattcctagctaaggtacatcggactccctcagtgtcgtgcatgcagagcccccttgcggagcttatcccgttcccctggtgtgaacctct 10215813  T
Q  208 cgtatcccc 216  Q
     ||||||||    
T  10215812 tgtatcccc 10215804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 139; Significance: 1e-72; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 104 - 298
Target Start/End: Original strand, 39888610 - 39888803
Alignment:
Q  104 tcccttacttgaccgatgaaaacctagctaaggaacatcggactccctcagttacgtgcgggcctaccttgcggagcgtatcccgttccccttggagaac 203  Q
    ||||||||||||||||||||||||||||||||| ||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||    
T  39888610 tcccttacttgaccgatgaaaacctagctaaggtacaccggactccctcagtgacgtgcgggcctaccttgcggagcgtatcccgttcccctt-gagaac 39888708  T
Q  204 ctctcgtatccccgttggcgtggataactgaaagacacgatacctaaatcttactttatggtcttgaccatatatattaacttgtcttagtactt 298  Q
    ||||||||||||| |||||||||||||| ||||| ||||| | ||| ||||||||||||||||||||||||||||  || |||||||||||||||    
T  39888709 ctctcgtatcccccttggcgtggataacggaaagccacgacaactacatcttactttatggtcttgaccatatatgatatcttgtcttagtactt 39888803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 104 - 278
Target Start/End: Original strand, 3083402 - 3083576
Alignment:
Q  104 tcccttacttgaccgatgaaaacctagctaaggaacatcggactccctcagttacgtgcgggcctaccttgcggagcgtatcccgttccccttggagaac 203  Q
    ||||||| ||||||||||||||||||||||||| |||  ||||||||||||| |||||||||||||||||  ||||| ||||||||||||||||||||||    
T  3083402 tcccttaattgaccgatgaaaacctagctaaggtacactggactccctcagtgacgtgcgggcctaccttttggagcatatcccgttccccttggagaac 3083501  T
Q  204 ctctcgtatccccgttggcgtggataactgaaagacacgatacctaaatcttactttatggtcttgaccatatat 278  Q
    ||||||||||||| |||| ||||||||| ||||||||||| | ||| |||||||||||||||||| |||||||||    
T  3083502 ctctcgtatcccccttggtgtggataacagaaagacacgacatctacatcttactttatggtctttaccatatat 3083576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 95 - 298
Target Start/End: Complemental strand, 15561919 - 15561716
Alignment:
Q  95 ggaagttaatcccttacttgaccgatgaaaacctagctaaggaacatcggactccctcagttacgtgcgggcctaccttgcggagcgtatcccgttcccc 194  Q
    |||| ||||| ||||||||||||| ||| ||||||||||||| |||||||||||||||| | ||||||||||| ||||||||||||||||||||||||||    
T  15561919 ggaaattaattccttacttgaccgttgagaacctagctaaggtacatcggactccctcaatgacgtgcgggccgaccttgcggagcgtatcccgttcccc 15561820  T
Q  195 ttg-gagaacctctcgtatccccgttggcgtggataactgaaagacacgatacctaaatcttactttatggtcttgaccatatatattaacttgtcttag 293  Q
    ||| ||||||||||||||||||| |||||||||||||| ||||||||||| ||||| ||||| | |||| ||||||| |||| ||  ||| |||||||||    
T  15561819 ttgcgagaacctctcgtatcccccttggcgtggataacggaaagacacgacacctacatcttgc-ttatagtcttgatcataaatgataatttgtcttag 15561721  T
Q  294 tactt 298  Q
    |||||    
T  15561720 tactt 15561716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 79 - 196
Target Start/End: Complemental strand, 11245611 - 11245494
Alignment:
Q  79 cgagtggagtaaccccggaagtt-aatcccttacttgaccgatgaaaacctagctaaggaacatcggactcc-ctcagttacgtgcgggcctaccttgcg 176  Q
    |||||||||||||||||  |||  |||||||||||| |||||||||  ||||||||||| |||||||||||| || | |  ||| |||||| ||||||||    
T  11245611 cgagtggagtaaccccg--agtacaatcccttactttaccgatgaattcctagctaaggtacatcggactcctcttaatgccgtacgggccgaccttgcg 11245514  T
Q  177 gagcgtatcccgttcccctt 196  Q
    ||||||||||||| ||||||    
T  11245513 gagcgtatcccgtccccctt 11245494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 139; Significance: 1e-72; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 104 - 298
Target Start/End: Complemental strand, 16878605 - 16878411
Alignment:
Q  104 tcccttacttgaccgatgaaaacctagctaaggaacatcggactccctcagttacgtgcgggcctaccttgcggagcgtatcccgttccccttggagaac 203  Q
    ||||||||||||||||||||||||||||||||| ||| |||||||||||||| || ||| ||||||||||| ||||||||||| ||| |||| |||||||    
T  16878605 tcccttacttgaccgatgaaaacctagctaaggtacaccggactccctcagtgacatgcaggcctaccttgtggagcgtatcctgtttccctcggagaac 16878506  T
Q  204 ctctcgtatccccgttggcgtggataactgaaagacacgatacctaaatcttactttatggtcttgaccatatatattaacttgtcttagtactt 298  Q
    ||||||||||||| |||||||||||||| ||||||||||| ||||| |||||||||||||||||||||||||||| |||||||||||||||||||    
T  16878505 ctctcgtatcccccttggcgtggataacggaaagacacgacacctacatcttactttatggtcttgaccatatatgttaacttgtcttagtactt 16878411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 104 - 298
Target Start/End: Complemental strand, 16990738 - 16990544
Alignment:
Q  104 tcccttacttgaccgatgaaaacctagctaaggaacatcggactccctcagttacgtgcgggcctaccttgcggagcgtatcccgttccccttggagaac 203  Q
    ||||||||||||||||||||||||||||||||| ||| |||||||||||||| || ||| ||||||||||| ||||||||||| ||| |||| |||||||    
T  16990738 tcccttacttgaccgatgaaaacctagctaaggtacaccggactccctcagtgacatgcaggcctaccttgtggagcgtatcctgtttccctcggagaac 16990639  T
Q  204 ctctcgtatccccgttggcgtggataactgaaagacacgatacctaaatcttactttatggtcttgaccatatatattaacttgtcttagtactt 298  Q
    ||||||||||||| |||||||||||||| ||||||||||| ||||| |||||||||||||||||||||||||||| |||||||||||||||||||    
T  16990638 ctctcgtatcccccttggcgtggataacggaaagacacgacacctacatcttactttatggtcttgaccatatatgttaacttgtcttagtactt 16990544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 104 - 255
Target Start/End: Original strand, 22827516 - 22827668
Alignment:
Q  104 tcccttacttgaccgatgaaaacctagctaaggaacatcggactccctcagttacgtgcgggcctaccttgcggagcgtatcccgttcccct-tggagaa 202  Q
    |||||||||||||||||||||||||| |||||| |||||||||||||||| | ||||||||||||||||||||||||||||| |||||||||   |||||    
T  22827516 tcccttacttgaccgatgaaaacctaactaaggtacatcggactccctcattgacgtgcgggcctaccttgcggagcgtatctcgttcccctgacgagaa 22827615  T
Q  203 cctctcgtatccccgttggcgtggataactgaaagacacgatacctaaatctt 255  Q
    |||||||||||||| |||||||||||||  ||||||||||| ||||| |||||    
T  22827616 cctctcgtatcccccttggcgtggataatggaaagacacgacacctacatctt 22827668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 102 - 195
Target Start/End: Complemental strand, 29791137 - 29791043
Alignment:
Q  102 aatcccttacttgaccgatgaaaacctagctaaggaacatcggactcc-ctcagttacgtgcgggcctaccttgcggagcgtatcccgttcccct 195  Q
    |||||||||||| |||||||||  ||||||||||| ||||| |||||| |||| |  |||||||| |||||||| |||||||||||||| |||||    
T  29791137 aatcccttactttaccgatgaattcctagctaaggtacatcagactcctctcaatgtcgtgcgggtctaccttgtggagcgtatcccgtccccct 29791043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 102 - 195
Target Start/End: Complemental strand, 6782 - 6689
Alignment:
Q  102 aatcccttacttgaccgatgaaaacctagctaaggaacatcggactccctcagttacgtgcgggcctaccttgcggagcgtatcccgttcccct 195  Q
    |||||| ||| ||||| |||||  ||||||||||| ||||| ||||||||||||  ||||||||||  ||||||| ||| ||||||||||||||    
T  6782 aatcccatacatgacctatgaattcctagctaaggcacatcagactccctcagtgtcgtgcgggccccccttgcgaagcttatcccgttcccct 6689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 102 - 195
Target Start/End: Complemental strand, 21338681 - 21338587
Alignment:
Q  102 aatcccttacttgaccgatgaaaacctagctaaggaacatcggactccctcagttacgtgcggg-cctaccttgcggagcgtatcccgttcccct 195  Q
    |||||| ||| |||||||||||  ||||||||||| |||| | |||||||||||  |||||||| ||  ||||||||||| ||||||||||||||    
T  21338681 aatcccatacatgaccgatgaattcctagctaaggcacattgaactccctcagtgtcgtgcgggcccccccttgcggagcttatcccgttcccct 21338587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 113 - 189
Target Start/End: Complemental strand, 19140 - 19064
Alignment:
Q  113 tgaccgatgaaaacctagctaaggaacatcggactccctcagttacgtgcgggcctaccttgcggagcgtatcccgt 189  Q
    |||||||||||  ||||||||||| ||||| |||| |||||||  |||||||||| ||||||||| ||||| |||||    
T  19140 tgaccgatgaattcctagctaaggtacatcagacttcctcagtgtcgtgcgggcccaccttgcggtgcgtaacccgt 19064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0042 (Bit Score: 134; Significance: 1e-69; HSPs: 1)
Name: scaffold0042
Description:

Target: scaffold0042; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 102 - 298
Target Start/End: Complemental strand, 10158 - 9961
Alignment:
Q  102 aatcccttacttgaccgatgaaaacctagctaaggaacatcggactccctcagttacgtgcgggcctaccttgcggagcgtatcccgttccccttg-gag 200  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| | |||    
T  10158 aatcccttacttgaccgatgaaaacctagctaaggtacatcggactccctcagtgacgtgcgggcctaccttgcggagcgtatcccgttcccctggcgag 10059  T
Q  201 aacctctcgtatccccgttggcgtggataactgaaagacacgatacctaaatcttactttatggtcttgaccatatatattaacttgtcttagtactt 298  Q
    |||||||||||||||| |||||  ||||||| | |||||| || ||||| ||||||||||||||||||||||||||||  ||| ||||||||||||||    
T  10058 aacctctcgtatcccccttggcaaggataacggtaagacatgacacctacatcttactttatggtcttgaccatatatgataatttgtcttagtactt 9961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 121; Significance: 6e-62; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 79 - 292
Target Start/End: Original strand, 24539896 - 24540109
Alignment:
Q  79 cgagtggagtaaccccggaagtt-aatcccttacttgaccgatgaaaacctagctaaggaacatcggactccctcagttacgtgcgggcctaccttgcgg 177  Q
    |||||||||||||||||  |||  ||||||||||||||| ||||||||||||||||||| ||| | |||||||||||| |||||||||| ||||||||||    
T  24539896 cgagtggagtaaccccg--agtacaatcccttacttgacagatgaaaacctagctaaggtacaccagactccctcagtgacgtgcgggcataccttgcgg 24539993  T
Q  178 agcgtatcccgttccccttg-gagaacctctcgtatccccgttggcgtggataactgaaagacacgatacctaaatcttactttatggtcttgaccatat 276  Q
    | ||||||| |||||||| | ||||||||||||||||||| |||||||||||||| |||||||| || ||||| ||||||||||||||||||||||||||    
T  24539994 accgtatccagttcccctggcgagaacctctcgtatcccccttggcgtggataacggaaagacatgacacctacatcttactttatggtcttgaccatat 24540093  T
Q  277 atattaacttgtctta 292  Q
    ||  ||||||||||||    
T  24540094 atgataacttgtctta 24540109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 82 - 195
Target Start/End: Original strand, 25239299 - 25239412
Alignment:
Q  82 gtggagtaaccccggaagt-taatcccttacttgaccgatgaaaacctagctaaggaacatcggactcc-ctcagttacgtgcgggcctaccttgcggag 179  Q
    ||||||||||||||  ||| ||||||| |||||||||||||||  ||||||||||| ||||| |||||| ||||||  ||||||||||||||||| ||||    
T  25239299 gtggagtaaccccg--agtataatcccatacttgaccgatgaattcctagctaaggtacatcagactcctctcagtgtcgtgcgggcctaccttgtggag 25239396  T
Q  180 cgtatcccgttcccct 195  Q
    ||| || |||||||||    
T  25239397 cgtgtctcgttcccct 25239412  T

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Target: chr8; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 102 - 193
Target Start/End: Complemental strand, 21539516 - 21539425
Alignment:
Q  102 aatcccttacttgaccgatgaaaacctagctaaggaacatcggactccctcagttacgtgcgggcctaccttgcggagcgtatcccgttccc 193  Q
    |||||| ||| |||||||||||||||||||||||| |||||||||||||||||| ||||  ||||   | ||||||||| ||||||||||||    
T  21539516 aatcccatacatgaccgatgaaaacctagctaaggcacatcggactccctcagtgacgtatgggctccctttgcggagcttatcccgttccc 21539425  T

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Target: chr8; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 102 - 196
Target Start/End: Complemental strand, 25188888 - 25188793
Alignment:
Q  102 aatcccttacttgaccgatgaaaacctagctaaggaacatcggactcc-ctcagttacgtgcgggcctaccttgcggagcgtatcccgttcccctt 196  Q
    |||||||||||| |||||||||| ||||||||||| |||||||||||| || | |  ||||||||||||||||||||| |||||| ||| ||||||    
T  25188888 aatcccttactttaccgatgaaatcctagctaaggtacatcggactcctcttaatgtcgtgcgggcctaccttgcggaacgtatctcgtccccctt 25188793  T

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Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 123 - 187
Target Start/End: Original strand, 30613627 - 30613691
Alignment:
Q  123 aaacctagctaaggaacatcggactccctcagttacgtgcgggcctaccttgcggagcgtatccc 187  Q
    ||||||||||| || ||||| ||||||||||||  ||||||||||||||||||||||||| ||||    
T  30613627 aaacctagctagggtacatcagactccctcagtgtcgtgcgggcctaccttgcggagcgtgtccc 30613691  T

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Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 104 - 229
Target Start/End: Complemental strand, 19440802 - 19440678
Alignment:
Q  104 tcccttacttgaccgatgaaaacctagctaaggaacatcggactccctcagttacgtgcgggcctaccttgcggagcgtatcccgttccccttg-gagaa 202  Q
    |||| ||| |||||||||||||||||| ||||| |||||| ||||||||| |  | || |||||  ||||||||||| |||| ||||||||| | | |||    
T  19440802 tcccatacatgaccgatgaaaacctagttaaggtacatcgaactccctcaatgtcatgtgggcc-cccttgcggagcttatcgcgttcccctggcgtgaa 19440704  T
Q  203 cctctcgtatccccgttggcgtggata 229  Q
    ||||| ||||||||  |||||||||||    
T  19440703 cctcttgtatcccc-ctggcgtggata 19440678  T

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Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 104 - 229
Target Start/End: Complemental strand, 19576952 - 19576828
Alignment:
Q  104 tcccttacttgaccgatgaaaacctagctaaggaacatcggactccctcagttacgtgcgggcctaccttgcggagcgtatcccgttccccttg-gagaa 202  Q
    |||| ||| |||||||||||||||||| ||||| |||||| ||||||||| |  | || |||||  ||||||||||| |||| ||||||||| | | |||    
T  19576952 tcccatacatgaccgatgaaaacctagttaaggtacatcgaactccctcaatgtcatgtgggcc-cccttgcggagcttatcgcgttcccctggcgtgaa 19576854  T
Q  203 cctctcgtatccccgttggcgtggata 229  Q
    ||||| ||||||||  |||||||||||    
T  19576853 cctcttgtatcccc-ctggcgtggata 19576828  T

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Target: chr5 (Bit Score: 81; Significance: 4e-38; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 49 - 149
Target Start/End: Original strand, 29253251 - 29253351
Alignment:
Q  49 attatctcagtttattttacggattaatcccgagtggagtaaccccggaagttaatcccttacttgaccgatgaaaacctagctaaggaacatcggactc 148  Q
    |||||||  ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||    
T  29253251 attatcttggttcattttacggattaatcccgagtggagtaaccccggaagttaatcccttacttgactgatgaaaacctagctaaggtacatcggactc 29253350  T
Q  149 c 149  Q
    |    
T  29253351 c 29253351  T

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Target: chr5; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 102 - 195
Target Start/End: Original strand, 37984678 - 37984772
Alignment:
Q  102 aatcccttacttgaccgatgaaaacctagctaaggaacatcggactcc-ctcagttacgtgcgggcctaccttgcggagcgtatcccgttcccct 195  Q
    ||||| ||||||||||||||||  ||||||||||| |||||||||||| || | |  |||||||||||||||||||||||||||||||| |||||    
T  37984678 aatcctttacttgaccgatgaattcctagctaaggtacatcggactcctcttaatgccgtgcgggcctaccttgcggagcgtatcccgtccccct 37984772  T

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Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 43 - 98
Target Start/End: Complemental strand, 26075458 - 26075403
Alignment:
Q  43 aacaatattatctcagtttattttacggattaatcccgagtggagtaaccccggaa 98  Q
    ||||||||||||| |||| |||||||||| ||| ||| ||||||||||||||||||    
T  26075458 aacaatattatctgagttcattttacggaataaacccaagtggagtaaccccggaa 26075403  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 63 - 107
Target Start/End: Original strand, 21493737 - 21493781
Alignment:
Q  63 ttttacggattaatcccgagtggagtaaccccggaagttaatccc 107  Q
    ||||||||||||||||| |||||||||||||| |||  |||||||    
T  21493737 ttttacggattaatcccaagtggagtaaccccagaacataatccc 21493781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 158 - 194
Target Start/End: Original strand, 22752689 - 22752725
Alignment:
Q  158 cgtgcgggcctaccttgcggagcgtatcccgttcccc 194  Q
    ||||||||||||||||||||||||| |||||| ||||    
T  22752689 cgtgcgggcctaccttgcggagcgtgtcccgtccccc 22752725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 102 - 229
Target Start/End: Original strand, 22268 - 22396
Alignment:
Q  102 aatcccttacttgaccgatgaaaacctagctaaggaacatcggactcc-ctcagttacgtgcgggcctaccttgcggagcgtatcccgttcccct-tgga 199  Q
    |||||| ||| |||||||||||  ||||||||||| |||||||||||| ||| ||  ||||| ||||||||||| ||||||| ||||||||||||  ||     
T  22268 aatcccatacatgaccgatgaattcctagctaaggtacatcggactcctctcggtgccgtgcaggcctaccttgtggagcgtgtcccgttcccctgaggt 22367  T
Q  200 gaacctctcgtatccccgttggcgtggata 229  Q
    |||||||| ||||||||  |||||||||||    
T  22368 gaacctcttgtatcccc-ctggcgtggata 22396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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