View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1312_high_13 (Length: 323)
Name: NF1312_high_13
Description: NF1312
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1312_high_13 |
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Alignment Details
Target: chr3 (Bit Score: 144; Significance: 1e-75; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 139 - 310
Target Start/End: Original strand, 1251924 - 1252095
Alignment:
| Q |
139 |
gcttttgtgttcctcaaatttgctaattaatccaagatttgaggtgaacacaacatattcaaaaagtccctttcagtgtttctaaaagaatctctagtgt |
238 |
Q |
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| T |
1251924 |
gcttttgtgttcctcaaacttgctaattaatccaagatttgaggtgcacacaacatattcaaaaagtcccttgcagtgtttctaaaagaatctctagtgt |
1252023 |
T |
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| Q |
239 |
catattgccaaccaccaccattcctatgtgctccagcggcagcttcaaacaacacactctcactgactgcct |
310 |
Q |
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| T |
1252024 |
catattgccaaccaccaccattcctatgtgctccagcggcagcttcaaactccacactctcgctggctgcct |
1252095 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 1 - 139
Target Start/End: Original strand, 1251659 - 1251797
Alignment:
| Q |
1 |
catttatatcagcttcatgtttttgatgcttctgctgttatttagatcaatccttattggacatgcagggaacgagtgggagctcaatcgttaatgtgaa |
100 |
Q |
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| T |
1251659 |
catttatatcagcttcatgtttttgatgcttctgctgttatttagatcaatccttattggacatgcagggaacgagtgggagctcaatcgttaatgtgaa |
1251758 |
T |
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| Q |
101 |
tttgtgtgctttactgattgtggaatattattggctgtg |
139 |
Q |
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| T |
1251759 |
tttgtgtgctttactgattgtggaatattattggctgtg |
1251797 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 139; Significance: 1e-72; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 1 - 139
Target Start/End: Original strand, 42018439 - 42018577
Alignment:
| Q |
1 |
catttatatcagcttcatgtttttgatgcttctgctgttatttagatcaatccttattggacatgcagggaacgagtgggagctcaatcgttaatgtgaa |
100 |
Q |
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| T |
42018439 |
catttatatcagcttcatgtttttgatgcttctgctgttatttagatcaatccttattggacatgcagggaacgagtgggagctcaatcgttaatgtgaa |
42018538 |
T |
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| Q |
101 |
tttgtgtgctttactgattgtggaatattattggctgtg |
139 |
Q |
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| T |
42018539 |
tttgtgtgctttactgattgtggaatattattggctgtg |
42018577 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 139 - 297
Target Start/End: Original strand, 42018701 - 42018859
Alignment:
| Q |
139 |
gcttttgtgttcctcaaatttgctaattaatccaagatttgaggtgaacacaacatattcaaaaagtccctttcagtgtttctaaaagaatctctagtgt |
238 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||| |||||||||||||||| |
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| T |
42018701 |
gcttttgtgttcctcaaacttgctaattaatccaagatttgaggtgcacacaacatattcaaaaagtcccttgcagtgtttctcaaagaatctctagtgt |
42018800 |
T |
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| Q |
239 |
catattgccaaccaccaccattcctatgtgctccagcggcagcttcaaacaacacactc |
297 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| |
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| T |
42018801 |
catattgccaaccaccaccattcctatgtgctccagcagcagcttcaaactccacactc |
42018859 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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