View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1312_high_15 (Length: 303)
Name: NF1312_high_15
Description: NF1312
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1312_high_15 |
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Alignment Details
Target: chr3 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 13 - 218
Target Start/End: Original strand, 40031550 - 40031755
Alignment:
| Q |
13 |
aatatgataaatattacgagtaatgtaatagttaaatagaagaaatgaggtaagaattttgacattataccattgcatgcacgaggatgagttaatttag |
112 |
Q |
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| T |
40031550 |
aatatgataaatattacgagtaatgtaatagttaaatagaagaaatgaggtaagaattttgacattataccattgcatgcacgaggatgagttaatttag |
40031649 |
T |
|
| Q |
113 |
gagacttttactccaattaatttagcttaaacccaccttagcaaaatatctcgtgaggaacgtaggatgtgaccccatagtatataggaccattttatca |
212 |
Q |
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||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40031650 |
gagacttttgctccaattaatttagcctaaacccaccttagcaaaatatctcgtgaggaacgtaggatgtgaccccatagtatataggaccattttatca |
40031749 |
T |
|
| Q |
213 |
tggtaa |
218 |
Q |
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|||||| |
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| T |
40031750 |
tggtaa |
40031755 |
T |
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