View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1312_high_25 (Length: 205)
Name: NF1312_high_25
Description: NF1312
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1312_high_25 |
 | |
|
| [»] scaffold0419 (1 HSPs) |
| | |
|
| [»] scaffold0277 (2 HSPs) |
| | |
|
| [»] scaffold0349 (1 HSPs) |
| | |
|
| [»] scaffold0003 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 168; Significance: 3e-90; HSPs: 36)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 6 - 193
Target Start/End: Original strand, 26143481 - 26143668
Alignment:
| Q |
6 |
catctccaacaatatcaatcatgttttcttaaatgtagccaaataccctgttgggttacagtcccgaatagaacaagtgaaattgcttcttgacaagggc |
105 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||| |||| |
|
|
| T |
26143481 |
catctccaacaatatcaatcatgtttttttaaatgtagccaaataccctgttggattacagtcccgaatagaagaagtgaaattgcttcttgacatgggc |
26143580 |
T |
|
| Q |
106 |
tctgaggatgaggtccgcatggtaggactttatggtactggaggcatgggtaaatcaacacttgcaaaagcagtttataattttgttg |
193 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26143581 |
tctgaggatgaggtccgcatggtaggactttttggtactggaggcatgggtaaatcaacacttgcaaaagcagtttataattttgttg |
26143668 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 164; E-Value: 7e-88
Query Start/End: Original strand, 6 - 193
Target Start/End: Original strand, 25580335 - 25580522
Alignment:
| Q |
6 |
catctccaacaatatcaatcatgttttcttaaatgtagccaaataccctgttgggttacagtcccgaatagaacaagtgaaattgcttcttgacaagggc |
105 |
Q |
| |
|
||||||||||||||||||||||||||| ||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
25580335 |
catctccaacaatatcaatcatgtttttttaaacgtagccaaataccctgttggattacagtcccgaatagaacaagtgaaattgcttcttgacatgggc |
25580434 |
T |
|
| Q |
106 |
tctgaggatgaggtccgcatggtaggactttatggtactggaggcatgggtaaatcaacacttgcaaaagcagtttataattttgttg |
193 |
Q |
| |
|
|||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25580435 |
tctgaggatgtggtccacatggtaggactttatggtactggaggcatgggtaaatcaacacttgcaaaagcagtttataattttgttg |
25580522 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 156; E-Value: 4e-83
Query Start/End: Original strand, 6 - 189
Target Start/End: Original strand, 25483672 - 25483855
Alignment:
| Q |
6 |
catctccaacaatatcaatcatgttttcttaaatgtagccaaataccctgttgggttacagtcccgaatagaacaagtgaaattgcttcttgacaagggc |
105 |
Q |
| |
|
||||||||||||||||||||||| ||| ||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
25483672 |
catctccaacaatatcaatcatgattttttaaacgtagccaaataccctgttggattacagtcccgaatagaacaagtgaaattgcttcttgacatgggc |
25483771 |
T |
|
| Q |
106 |
tctgaggatgaggtccgcatggtaggactttatggtactggaggcatgggtaaatcaacacttgcaaaagcagtttataatttt |
189 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
25483772 |
tctgaggatgaggtccgcatggtaggactttttggtactggaggcatgggtaaatcaacacttgcaaaagcagtttttaatttt |
25483855 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 156; E-Value: 4e-83
Query Start/End: Original strand, 6 - 193
Target Start/End: Original strand, 25539156 - 25539343
Alignment:
| Q |
6 |
catctccaacaatatcaatcatgttttcttaaatgtagccaaataccctgttgggttacagtcccgaatagaacaagtgaaattgcttcttgacaagggc |
105 |
Q |
| |
|
||||||||||||||||||||||||||| ||| |||| ||||||||||||||||| |||||||||| |||||||||||||||||||||||||||| |||| |
|
|
| T |
25539156 |
catctccaacaatatcaatcatgtttttttatatgtggccaaataccctgttggattacagtccccaatagaacaagtgaaattgcttcttgacttgggc |
25539255 |
T |
|
| Q |
106 |
tctgaggatgaggtccgcatggtaggactttatggtactggaggcatgggtaaatcaacacttgcaaaagcagtttataattttgttg |
193 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
25539256 |
tctgaggatgaggtccgcatggtaggactttatggtactggaggcatgggtaaatcaacacttgcaaaagcagtttttaattttgttg |
25539343 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 139; E-Value: 6e-73
Query Start/End: Original strand, 5 - 187
Target Start/End: Original strand, 26056534 - 26056716
Alignment:
| Q |
5 |
gcatctccaacaatatcaatcatgttttcttaaatgtagccaaataccctgttgggttacagtcccgaatagaacaagtgaaattgcttcttgacaaggg |
104 |
Q |
| |
|
||||||||||||| |||||||||||||| ||||| |||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
26056534 |
gcatctccaacaagatcaatcatgtttttttaaacgtagccaaataccctgttggattgcagtcccgaatagaacaagtgaaattgcttcttgacatggg |
26056633 |
T |
|
| Q |
105 |
ctctgaggatgaggtccgcatggtaggactttatggtactggaggcatgggtaaatcaacacttgcaaaagcagtttataatt |
187 |
Q |
| |
|
||||||| |||||||||||||||||||| ||| |||||| ||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
26056634 |
ctctgagaatgaggtccgcatggtaggaatttttggtaccggaggcatgggtaaatcaacacttgcaaaagcagtttttaatt |
26056716 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 139; E-Value: 6e-73
Query Start/End: Original strand, 5 - 187
Target Start/End: Original strand, 26076504 - 26076686
Alignment:
| Q |
5 |
gcatctccaacaatatcaatcatgttttcttaaatgtagccaaataccctgttgggttacagtcccgaatagaacaagtgaaattgcttcttgacaaggg |
104 |
Q |
| |
|
||||||||||||| |||||||||||||| ||||| |||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
26076504 |
gcatctccaacaagatcaatcatgtttttttaaacgtagccaaataccctgttggattgcagtcccgaatagaacaagtgaaattgcttcttgacatggg |
26076603 |
T |
|
| Q |
105 |
ctctgaggatgaggtccgcatggtaggactttatggtactggaggcatgggtaaatcaacacttgcaaaagcagtttataatt |
187 |
Q |
| |
|
||||||| |||||||||||||||||||| ||| |||||| ||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
26076604 |
ctctgagaatgaggtccgcatggtaggaatttttggtaccggaggcatgggtaaatcaacacttgcaaaagcagtttttaatt |
26076686 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 114; E-Value: 5e-58
Query Start/End: Original strand, 6 - 191
Target Start/End: Original strand, 26656578 - 26656763
Alignment:
| Q |
6 |
catctccaacaatatcaatcatgttttcttaaatgtagccaaataccctgttgggttacagtcccgaatagaacaagtgaaattgcttcttgacaagggc |
105 |
Q |
| |
|
||||||| |||| ||||||| |||||| ||| |||| ||||||||||||||||| ||| |||| ||| || |||||||||||||||||||||| ||||| |
|
|
| T |
26656578 |
catctccgacaagatcaatcgtgtttttttacatgttgccaaataccctgttggattagagtctcgagtacaacaagtgaaattgcttcttgataaggga |
26656677 |
T |
|
| Q |
106 |
tctgaggatgaggtccgcatggtaggactttatggtactggaggcatgggtaaatcaacacttgcaaaagcagtttataattttgt |
191 |
Q |
| |
|
||| |||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||| |
|
|
| T |
26656678 |
tctaaggatgaggttctcatggtaggactttatggtactggaggcatgggtaaatcaacacttgccaaagcaatttataattttgt |
26656763 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 114; E-Value: 5e-58
Query Start/End: Original strand, 6 - 191
Target Start/End: Original strand, 26762549 - 26762734
Alignment:
| Q |
6 |
catctccaacaatatcaatcatgttttcttaaatgtagccaaataccctgttgggttacagtcccgaatagaacaagtgaaattgcttcttgacaagggc |
105 |
Q |
| |
|
||||||| |||| ||||||| |||||| ||| |||| ||||||||||||||||| ||| |||| ||| || |||||||||||||||||||||| ||||| |
|
|
| T |
26762549 |
catctccgacaagatcaatcgtgtttttttacatgttgccaaataccctgttggattagagtctcgagtacaacaagtgaaattgcttcttgataaggga |
26762648 |
T |
|
| Q |
106 |
tctgaggatgaggtccgcatggtaggactttatggtactggaggcatgggtaaatcaacacttgcaaaagcagtttataattttgt |
191 |
Q |
| |
|
||| |||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||| |
|
|
| T |
26762649 |
tctaaggatgaggttctcatggtaggactttatggtactggaggcatgggtaaatcaacacttgccaaagcaatttataattttgt |
26762734 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 40 - 193
Target Start/End: Original strand, 26862227 - 26862380
Alignment:
| Q |
40 |
gtagccaaataccctgttgggttacagtcccgaatagaacaagtgaaattgcttcttgacaagggctctgaggatgaggtccgcatggtaggactttatg |
139 |
Q |
| |
|
|||||||||||||||||||| ||| |||||||| ||||||||||||||||||||||||| | || ||||| || | ||| | ||||||||||||||||| |
|
|
| T |
26862227 |
gtagccaaataccctgttggattaaagtcccgagtagaacaagtgaaattgcttcttgatatggaatctgatgaaggggtacacatggtaggactttatg |
26862326 |
T |
|
| Q |
140 |
gtactggaggcatgggtaaatcaacacttgcaaaagcagtttataattttgttg |
193 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
26862327 |
gtactggaggcatggggaaatcaacacttgcaaaagcaatttataattttgttg |
26862380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 6 - 193
Target Start/End: Original strand, 26647092 - 26647279
Alignment:
| Q |
6 |
catctccaacaatatcaatcatgttttcttaaatgtagccaaataccctgttgggttacagtcccgaatagaacaagtgaaattgcttcttgacaagggc |
105 |
Q |
| |
|
|||||||||||| ||||||| ||| | ||| |||||||||||||||||||||| ||| |||||||| ||||||||||||||||||||||||| || | |
|
|
| T |
26647092 |
catctccaacaagatcaatcgtgtcattttacatgtagccaaataccctgttggattagagtcccgattagaacaagtgaaattgcttcttgataaagaa |
26647191 |
T |
|
| Q |
106 |
tctgaggatgaggtccgcatggtaggactttatggtactggaggcatgggtaaatcaacacttgcaaaagcagtttataattttgttg |
193 |
Q |
| |
|
||||| || | ||||| |||||||||||||||||||||||||| ||||||||||||||||||| ||||| ||||||||||||||| |
|
|
| T |
26647192 |
tctgatgaaggggtccatatggtaggactttatggtactggaggtttgggtaaatcaacacttgccaaagcgatttataattttgttg |
26647279 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 6 - 193
Target Start/End: Original strand, 26753060 - 26753247
Alignment:
| Q |
6 |
catctccaacaatatcaatcatgttttcttaaatgtagccaaataccctgttgggttacagtcccgaatagaacaagtgaaattgcttcttgacaagggc |
105 |
Q |
| |
|
|||||||||||| ||||||| ||| | ||| |||||||||||||||||||||| ||| |||||||| ||||||||||||||||||||||||| || | |
|
|
| T |
26753060 |
catctccaacaagatcaatcgtgtcattttacatgtagccaaataccctgttggattagagtcccgattagaacaagtgaaattgcttcttgataaagaa |
26753159 |
T |
|
| Q |
106 |
tctgaggatgaggtccgcatggtaggactttatggtactggaggcatgggtaaatcaacacttgcaaaagcagtttataattttgttg |
193 |
Q |
| |
|
||||| || | ||||| |||||||||||||||||||||||||| ||||||||||||||||||| ||||| ||||||||||||||| |
|
|
| T |
26753160 |
tctgatgaaggggtccatatggtaggactttatggtactggaggtttgggtaaatcaacacttgccaaagcgatttataattttgttg |
26753247 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 7 - 193
Target Start/End: Original strand, 26884684 - 26884870
Alignment:
| Q |
7 |
atctccaacaatatcaatcatgttttcttaaatgtagccaaataccctgttgggttacagtcccgaatagaacaagtgaaattgcttcttgacaagggct |
106 |
Q |
| |
|
|||||| |||| ||||||| |||| | ||| |||||||||||||||||||||| ||||||| |||| || ||||| | |||||||||||||| |||| | |
|
|
| T |
26884684 |
atctccgacaaaatcaatcgtgttgttttacatgtagccaaataccctgttggattacagtaccgagtacaacaattaaaattgcttcttgataaggaat |
26884783 |
T |
|
| Q |
107 |
ctgaggatgaggtccgcatggtaggactttatggtactggaggcatgggtaaatcaacacttgcaaaagcagtttataattttgttg |
193 |
Q |
| |
|
|| | || | ||| | |||||||||| ||||||||||||||||| |||||||||||||||||||||||||| ||||||||| ||||| |
|
|
| T |
26884784 |
ctaacgaaggggtacacatggtaggaatttatggtactggaggcttgggtaaatcaacacttgcaaaagcaatttataattatgttg |
26884870 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 38 - 188
Target Start/End: Original strand, 27215097 - 27215247
Alignment:
| Q |
38 |
atgtagccaaataccctgttgggttacagtcccgaatagaacaagtgaaattgcttcttgacaagggctctgaggatgaggtccgcatggtaggacttta |
137 |
Q |
| |
|
|||| |||||| |||||||||| ||||| ||| |||| ||||||| |||||||||||||||||||| ||| |||| ||||||| ||||||||||||| | |
|
|
| T |
27215097 |
atgttgccaaacaccctgttggattacatacccaaatacaacaagtaaaattgcttcttgacaagggatctaaggaagaggtccacatggtaggacttca |
27215196 |
T |
|
| Q |
138 |
tggtactggaggcatgggtaaatcaacacttgcaaaagcagtttataattt |
188 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||| ||| |||||| |
|
|
| T |
27215197 |
tggagctggaggcatgggtaaatcaacacttgcaaaagcaatttttaattt |
27215247 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #14
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 33 - 189
Target Start/End: Original strand, 28786878 - 28787034
Alignment:
| Q |
33 |
cttaaatgtagccaaataccctgttgggttacagtcccgaatagaacaagtgaaattgcttcttgacaagggctctgaggatgaggtccgcatggtagga |
132 |
Q |
| |
|
|||| |||| ||||| ||||||||||| || ||||| ||| || |||||||||||| ||||||||| | || ||||| |||| ||||||||||||||| |
|
|
| T |
28786878 |
cttacatgttgccaattaccctgttggattgcagtctcgagtacaacaagtgaaatcgcttcttgatgaaggatctgatgatggagtccgcatggtagga |
28786977 |
T |
|
| Q |
133 |
ctttatggtactggaggcatgggtaaatcaacacttgcaaaagcagtttataatttt |
189 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||| ||||||| ||||||||||| |
|
|
| T |
28786978 |
ctttatggtactggaggcttgggtaaatcaacacttggaaaagcaatttataatttt |
28787034 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #15
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 33 - 189
Target Start/End: Original strand, 28792999 - 28793155
Alignment:
| Q |
33 |
cttaaatgtagccaaataccctgttgggttacagtcccgaatagaacaagtgaaattgcttcttgacaagggctctgaggatgaggtccgcatggtagga |
132 |
Q |
| |
|
|||| |||| ||||| ||||||||||| || ||||| ||| || |||||||||||| ||||||||| | || ||||| |||| ||||||||||||||| |
|
|
| T |
28792999 |
cttacatgttgccaattaccctgttggattgcagtctcgagtacaacaagtgaaatcgcttcttgatgaaggatctgatgatggagtccgcatggtagga |
28793098 |
T |
|
| Q |
133 |
ctttatggtactggaggcatgggtaaatcaacacttgcaaaagcagtttataatttt |
189 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||| ||||||| ||||||||||| |
|
|
| T |
28793099 |
ctttatggtactggaggcttgggtaaatcaacacttggaaaagcaatttataatttt |
28793155 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #16
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 19 - 174
Target Start/End: Complemental strand, 25492875 - 25492720
Alignment:
| Q |
19 |
atcaatcatgttttcttaaatgtagccaaataccctgttgggttacagtcccgaatagaacaagtgaaattgcttcttgacaagggctctgaggatgagg |
118 |
Q |
| |
|
||||||| ||||| ||| |||| ||||||||||||||||| ||||| |||||| || |||| |||||||||||||| || ||| |||||||||||| |
|
|
| T |
25492875 |
atcaatcgtgtttcattacatgttgccaaataccctgttggattacaatcccgagtacaacacgtgaaattgcttctagatgaggtatctgaggatgagt |
25492776 |
T |
|
| Q |
119 |
tccgcatggtaggactttatggtactggaggcatgggtaaatcaacacttgcaaaa |
174 |
Q |
| |
|
||| |||||||||||||||||||||||||||| | ||||||||||||||||||||| |
|
|
| T |
25492775 |
tccacatggtaggactttatggtactggaggcttaggtaaatcaacacttgcaaaa |
25492720 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #17
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 43 - 188
Target Start/End: Complemental strand, 27337627 - 27337482
Alignment:
| Q |
43 |
gccaaataccctgttgggttacagtcccgaatagaacaagtgaaattgcttcttgacaagggctctgaggatgaggtccgcatggtaggactttatggta |
142 |
Q |
| |
|
||||||||||||||||| |||||||||||| || ||||||| |||||||||||||| ||| ||||| || | |||| |||||||||||||||||||| |
|
|
| T |
27337627 |
gccaaataccctgttggattacagtcccgagtacaacaagtaaaattgcttcttgatgaggaatctgatgaaggggtcaacatggtaggactttatggta |
27337528 |
T |
|
| Q |
143 |
ctggaggcatgggtaaatcaacacttgcaaaagcagtttataattt |
188 |
Q |
| |
|
|| ||||| |||| ||||||||||||||||||||| |||||||||| |
|
|
| T |
27337527 |
ctagaggcttgggaaaatcaacacttgcaaaagcaatttataattt |
27337482 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #18
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 43 - 188
Target Start/End: Complemental strand, 27398367 - 27398222
Alignment:
| Q |
43 |
gccaaataccctgttgggttacagtcccgaatagaacaagtgaaattgcttcttgacaagggctctgaggatgaggtccgcatggtaggactttatggta |
142 |
Q |
| |
|
||||||||||||||||| |||||||||||| || ||||||| |||||||||||||| ||| ||||| || | |||| |||||||||||||||||||| |
|
|
| T |
27398367 |
gccaaataccctgttggattacagtcccgagtacaacaagtaaaattgcttcttgatgaggaatctgatgaaggggtcaacatggtaggactttatggta |
27398268 |
T |
|
| Q |
143 |
ctggaggcatgggtaaatcaacacttgcaaaagcagtttataattt |
188 |
Q |
| |
|
|| ||||| |||| ||||||||||||||||||||| |||||||||| |
|
|
| T |
27398267 |
ctagaggcttgggaaaatcaacacttgcaaaagcaatttataattt |
27398222 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #19
Raw Score: 76; E-Value: 2e-35
Query Start/End: Original strand, 33 - 188
Target Start/End: Complemental strand, 27530843 - 27530688
Alignment:
| Q |
33 |
cttaaatgtagccaaataccctgttgggttacagtcccgaatagaacaagtgaaattgcttcttgacaagggctctgaggatgaggtccgcatggtagga |
132 |
Q |
| |
|
|||| |||| |||||||| |||||||| |||||||||||| || |||| |||||| || |||||| | ||||| |||||||||| |||||||||| |
|
|
| T |
27530843 |
cttagatgttgccaaatatcctgttggattacagtcccgagtacaacatgtgaaagggcatcttgatgaaaaatctgatgatgaggtccacatggtagga |
27530744 |
T |
|
| Q |
133 |
ctttatggtactggaggcatgggtaaatcaacacttgcaaaagcagtttataattt |
188 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||| |||||||||| |
|
|
| T |
27530743 |
ctttatggtactggaggcataggtaaatcaacacttgcaaaagcaatttataattt |
27530688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #20
Raw Score: 73; E-Value: 1e-33
Query Start/End: Original strand, 33 - 189
Target Start/End: Complemental strand, 27718041 - 27717885
Alignment:
| Q |
33 |
cttaaatgtagccaaataccctgttgggttacagtcccgaatagaacaagtgaaattgcttcttgacaagggctctgaggatgaggtccgcatggtagga |
132 |
Q |
| |
|
|||| |||| ||||| ||||||||||| || ||||| ||| || |||||||||||| ||||||||| | | ||||| |||| |||| |||||||||| |
|
|
| T |
27718041 |
cttacatgttgccaattaccctgttggattgcagtctcgagtacaacaagtgaaatcgcttcttgatgaaagatctgatgatggagtccacatggtagga |
27717942 |
T |
|
| Q |
133 |
ctttatggtactggaggcatgggtaaatcaacacttgcaaaagcagtttataatttt |
189 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
27717941 |
ctttatggtactggaggattgggtaaatcaacacttgcaaaagcaatttataatttt |
27717885 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #21
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 33 - 185
Target Start/End: Original strand, 28781741 - 28781893
Alignment:
| Q |
33 |
cttaaatgtagccaaataccctgttgggttacagtcccgaatagaacaagtgaaattgcttcttgacaagggctctgaggatgaggtccgcatggtagga |
132 |
Q |
| |
|
|||| |||| ||||| ||||||||||| |||||||||||| || |||||||||||| |||||||| | || | ||| ||| ||| | ||||||||| |
|
|
| T |
28781741 |
cttacatgttgccaattaccctgttggattacagtcccgagtacaacaagtgaaatcgcttcttggtgaaggatatgataatggagtcaggatggtagga |
28781840 |
T |
|
| Q |
133 |
ctttatggtactggaggcatgggtaaatcaacacttgcaaaagcagtttataa |
185 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||| ||||||||||||||| |
|
|
| T |
28781841 |
ctttatggtactggaggcttgggtaaatcaacacttgtaaaagcagtttataa |
28781893 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #22
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 6 - 95
Target Start/End: Original strand, 25511551 - 25511640
Alignment:
| Q |
6 |
catctccaacaatatcaatcatgttttcttaaatgtagccaaataccctgttgggttacagtcccgaatagaacaagtgaaattgcttct |
95 |
Q |
| |
|
|||||||||||| |||||||||||||| || || |||||||||||||||||||| || |||||||||||||||||||||||||||||||| |
|
|
| T |
25511551 |
catctccaacaagatcaatcatgtttttttgaacgtagccaaataccctgttggattgcagtcccgaatagaacaagtgaaattgcttct |
25511640 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #23
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 33 - 189
Target Start/End: Complemental strand, 27610662 - 27610506
Alignment:
| Q |
33 |
cttaaatgtagccaaataccctgttgggttacagtcccgaatagaacaagtgaaattgcttcttgacaagggctctgaggatgaggtccgcatggtagga |
132 |
Q |
| |
|
|||| |||| ||||| ||||||||||| || ||||| | | || || ||||||||| ||||||||| | | ||||| |||| |||| |||||||||| |
|
|
| T |
27610662 |
cttacatgttgccaattaccctgttggattgcagtctcaagtacaagaagtgaaatcgcttcttgatgaaagatctgatgatggagtccacatggtagga |
27610563 |
T |
|
| Q |
133 |
ctttatggtactggaggcatgggtaaatcaacacttgcaaaagcagtttataatttt |
189 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
27610562 |
ctttatggtactggaggattgggtaaatcaacacttgcaaaagcaatttataatttt |
27610506 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #24
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 33 - 189
Target Start/End: Complemental strand, 27604246 - 27604090
Alignment:
| Q |
33 |
cttaaatgtagccaaataccctgttgggttacagtcccgaatagaacaagtgaaattgcttcttgacaagggctctgaggatgaggtccgcatggtagga |
132 |
Q |
| |
|
|||| |||| ||||| || ||| |||| || ||||| ||| || |||||||||||| |||||||| | | ||||| |||| |||| |||||||||| |
|
|
| T |
27604246 |
cttacatgttgccaattatcctattggattgcagtctcgagtacaacaagtgaaatctcttcttgatgaaagatctgatgatggagtccacatggtagga |
27604147 |
T |
|
| Q |
133 |
ctttatggtactggaggcatgggtaaatcaacacttgcaaaagcagtttataatttt |
189 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
27604146 |
ctttatggtactggaggattgggtaaatcaacacttgcaaaagcaatttataatttt |
27604090 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #25
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 38 - 177
Target Start/End: Original strand, 26824464 - 26824603
Alignment:
| Q |
38 |
atgtagccaaataccctgttgggttacagtcccgaatagaacaagtgaaattgcttcttgacaagggctctgaggatgaggtccgcatggtaggacttta |
137 |
Q |
| |
|
|||| ||||||||||| ||||| |||||||||||| || |||||||||||| |||||||| || | ||||| |||| ||||| |||||||||||||| |
|
|
| T |
26824464 |
atgttgccaaatacccggttggattacagtcccgagtacaacaagtgaaatctcttcttgataacgaatctgatgatgtggtccatatggtaggacttta |
26824563 |
T |
|
| Q |
138 |
tggtactggaggcatgggtaaatcaacacttgcaaaagca |
177 |
Q |
| |
|
|||| |||||| | |||||||||||||||||||||||| |
|
|
| T |
26824564 |
cggtattggaggtttaggtaaatcaacacttgcaaaagca |
26824603 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #26
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 6 - 194
Target Start/End: Original strand, 31285172 - 31285360
Alignment:
| Q |
6 |
catctccaacaatatcaatcatgttttcttaaatgtagccaaataccctgttgggttacagtcccgaatagaacaagtgaaattgcttcttgacaagggc |
105 |
Q |
| |
|
|||||||||||| ||||||| ||| |||| |||| ||||| ||||||||||| || ||| |||||| |||||||||||||||||||||| |||| |
|
|
| T |
31285172 |
catctccaacaagatcaatcgtgtgcccttacatgttgccaattaccctgttggatttaagtttcgaatacaacaagtgaaattgcttcttgataaggaa |
31285271 |
T |
|
| Q |
106 |
tctgaggatgaggtccgcatggtaggactttatggtactggaggcatgggtaaatcaacacttgcaaaagcagtttataattttgttgg |
194 |
Q |
| |
|
|| | | | ||| | |||||||||||||||||| | |||||| ||||||||||||||||||||| |||| | ||||||||| |||| |
|
|
| T |
31285272 |
actaataaaggggtacacatggtaggactttatgggataggaggcttgggtaaatcaacacttgcaagagcaatctataattttattgg |
31285360 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #27
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 6 - 193
Target Start/End: Original strand, 26623884 - 26624071
Alignment:
| Q |
6 |
catctccaacaatatcaatcatgttttcttaaatgtagccaaataccctgttgggttacagtcccgaatagaacaagtgaaattgcttcttgacaagggc |
105 |
Q |
| |
|
|||||||||||| ||||||| ||| |||| |||| || |||||||||||||| |||||||| | | || |||||||||||| |||||||| || || |
|
|
| T |
26623884 |
catctccaacaagatcaatcgtgtgcccttacatgttgctaaataccctgttggattacagtctcaactacaacaagtgaaatcacttcttgataatgga |
26623983 |
T |
|
| Q |
106 |
tctgaggatgaggtccgcatggtaggactttatggtactggaggcatgggtaaatcaacacttgcaaaagcagtttataattttgttg |
193 |
Q |
| |
|
||||| |||| ||||| ||||| ||| | ||||| | ||||||| |||| |||||||||||||||| |||| | ||||| ||||||| |
|
|
| T |
26623984 |
tctgatgatggggtccatatggttggaatgtatgggattggaggcttgggcaaatcaacacttgcaagagcaatctataactttgttg |
26624071 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #28
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 6 - 193
Target Start/End: Original strand, 26729861 - 26730048
Alignment:
| Q |
6 |
catctccaacaatatcaatcatgttttcttaaatgtagccaaataccctgttgggttacagtcccgaatagaacaagtgaaattgcttcttgacaagggc |
105 |
Q |
| |
|
|||||||||||| ||||||| ||| |||| |||| || |||||||||||||| |||||||| | | || |||||||||||| |||||||| || || |
|
|
| T |
26729861 |
catctccaacaagatcaatcgtgtgcccttacatgttgctaaataccctgttggattacagtctcaactacaacaagtgaaatcacttcttgataatgga |
26729960 |
T |
|
| Q |
106 |
tctgaggatgaggtccgcatggtaggactttatggtactggaggcatgggtaaatcaacacttgcaaaagcagtttataattttgttg |
193 |
Q |
| |
|
||||| |||| ||||| ||||| ||| | ||||| | ||||||| |||| |||||||||||||||| |||| | ||||| ||||||| |
|
|
| T |
26729961 |
tctgatgatggggtccatatggttggaatgtatgggattggaggcttgggcaaatcaacacttgcaagagcaatctataactttgttg |
26730048 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #29
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 49 - 193
Target Start/End: Complemental strand, 27705930 - 27705786
Alignment:
| Q |
49 |
taccctgttgggttacagtcccgaatagaacaagtgaaattgcttcttgacaagggctctgaggatgaggtccgcatggtaggactttatggtactggag |
148 |
Q |
| |
|
||||||||||| || ||||| ||| || |||||||||||| |||||||| |||| |||| |||| ||||| ||||| ||| ||| ||| | ||||| |
|
|
| T |
27705930 |
taccctgttggattgcagtctcgagtacaacaagtgaaatcacttcttgatgagggacctgatgatggggtccatatggttggaatttttggcattggag |
27705831 |
T |
|
| Q |
149 |
gcatgggtaaatcaacacttgcaaaagcagtttataattttgttg |
193 |
Q |
| |
|
|| ||||||||||||||||||||| |||| ||||||||||||||| |
|
|
| T |
27705830 |
gcttgggtaaatcaacacttgcaagagcaatttataattttgttg |
27705786 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #30
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 49 - 193
Target Start/End: Complemental strand, 27427138 - 27426994
Alignment:
| Q |
49 |
taccctgttgggttacagtcccgaatagaacaagtgaaattgcttcttgacaagggctctgaggatgaggtccgcatggtaggactttatggtactggag |
148 |
Q |
| |
|
||||||||||| || ||||| ||| || |||||||||||| ||||||||| |||| |||| |||| ||||| ||||| ||| ||||||| | ||||| |
|
|
| T |
27427138 |
taccctgttggattgcagtctcgagtacaacaagtgaaatcgcttcttgatgagggacctgatgatggggtccatatggttggaatttatgggattggag |
27427039 |
T |
|
| Q |
149 |
gcatgggtaaatcaacacttgcaaaagcagtttataattttgttg |
193 |
Q |
| |
|
|| ||||||||||||||||||| |||| | ||||||||||||| |
|
|
| T |
27427038 |
gctcaggtaaatcaacacttgcaagagcaatctataattttgttg |
27426994 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #31
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 33 - 185
Target Start/End: Complemental strand, 27592563 - 27592411
Alignment:
| Q |
33 |
cttaaatgtagccaaataccctgttgggttacagtcccgaatagaacaagtgaaattgcttcttgacaagggctctgaggatgaggtccgcatggtagga |
132 |
Q |
| |
|
||||||||| |||| ||||||||||| || ||||| ||| || |||||||||||| ||||||||| | || ||||| ||| ||||| ||||| ||| |
|
|
| T |
27592563 |
cttaaatgttgccacttaccctgttggattgcagtctcgagtacaacaagtgaaatcgcttcttgatgaaggatctgatcatggggtccatatggttgga |
27592464 |
T |
|
| Q |
133 |
ctttatggtactggaggcatgggtaaatcaacacttgcaaaagcagtttataa |
185 |
Q |
| |
|
||||||| | ||||||| |||| |||||||||||||| |||||| ||||||| |
|
|
| T |
27592463 |
atttatgggattggaggcttgggaaaatcaacacttgcgaaagcaatttataa |
27592411 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #32
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 49 - 193
Target Start/End: Original strand, 26803102 - 26803246
Alignment:
| Q |
49 |
taccctgttgggttacagtcccgaatagaacaagtgaaattgcttcttgacaagggctctgaggatgaggtccgcatggtaggactttatggtactggag |
148 |
Q |
| |
|
||||||||||| || || || ||| || || ||||||||| ||||||||| |||| |||| |||| ||||| ||||| ||| ||||||| | ||||| |
|
|
| T |
26803102 |
taccctgttggattgcactctcgagtacaagaagtgaaatcgcttcttgatgagggacctgatgatggggtccatatggttggaatttatgggattggag |
26803201 |
T |
|
| Q |
149 |
gcatgggtaaatcaacacttgcaaaagcagtttataattttgttg |
193 |
Q |
| |
|
|| ||||||||||| ||||||||| |||| | ||||||||||||| |
|
|
| T |
26803202 |
gcttgggtaaatcagcacttgcaagagcaatctataattttgttg |
26803246 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #33
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 49 - 189
Target Start/End: Complemental strand, 27677146 - 27677006
Alignment:
| Q |
49 |
taccctgttgggttacagtcccgaatagaacaagtgaaattgcttcttgacaagggctctgaggatgaggtccgcatggtaggactttatggtactggag |
148 |
Q |
| |
|
||||||||||| || ||||| ||| || ||||| |||||| ||||||||| | || ||||| ||| ||||| ||||| ||| ||||||| | ||||| |
|
|
| T |
27677146 |
taccctgttggattgcagtctcgagtacaacaaatgaaatcgcttcttgatgaaggatctgatcatggggtccatatggttggaatttatgggattggag |
27677047 |
T |
|
| Q |
149 |
gcatgggtaaatcaacacttgcaaaagcagtttataatttt |
189 |
Q |
| |
|
|| |||| |||||||||||||| |||||| ||||||||||| |
|
|
| T |
27677046 |
gcttgggaaaatcaacacttgcgaaagcaatttataatttt |
27677006 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #34
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 49 - 198
Target Start/End: Original strand, 27679606 - 27679755
Alignment:
| Q |
49 |
taccctgttgggttacagtcccgaatagaacaagtgaaattgcttcttgacaagggctctgaggatgaggtccgcatggtaggactttatggtactggag |
148 |
Q |
| |
|
||||||||||| || ||||| ||| || |||||||||||| ||||||||| |||| || || |||| ||||| ||||| ||| ||||||| | ||||| |
|
|
| T |
27679606 |
taccctgttggattgcagtctcgagtacaacaagtgaaatcgcttcttgatgagggatccgatgatggggtccatatggttggaatttatggcattggag |
27679705 |
T |
|
| Q |
149 |
gcatgggtaaatcaacacttgcaaaagcagtttataattttgttggagat |
198 |
Q |
| |
|
| |||| |||||||||||||||| | | | ||||||||||||| |||| |
|
|
| T |
27679706 |
gtttggggaaatcaacacttgcaagacaaatctataattttgttgcagat |
27679755 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #35
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 141 - 187
Target Start/End: Original strand, 25511640 - 25511686
Alignment:
| Q |
141 |
tactggaggcatgggtaaatcaacacttgcaaaagcagtttataatt |
187 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
25511640 |
tactagaggcatgggtaaatcaacacttgcaaaagcagtttttaatt |
25511686 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #36
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 33 - 193
Target Start/End: Complemental strand, 27698128 - 27697968
Alignment:
| Q |
33 |
cttaaatgtagccaaataccctgttgggttacagtcccgaatagaacaagtgaaattgcttcttgacaagggctctgaggatgaggtccgcatggtagga |
132 |
Q |
| |
|
|||| |||| ||||| ||||||||||| |||||||| | | || || |||||||| ||||||| || || ||||| |||| ||||| ||||| ||| |
|
|
| T |
27698128 |
cttacatgttgccaattaccctgttggattacagtctcaagtacaaagagtgaaatcaattcttgataatggatctgatgatggggtccatatggttgga |
27698029 |
T |
|
| Q |
133 |
ctttatggtactggaggcatgggtaaatcaacacttgcaaaagcagtttataattttgttg |
193 |
Q |
| |
|
||| ||| | ||||||| |||| |||||||||||||||| |||| | |||||||| |||| |
|
|
| T |
27698028 |
atttttgggattggaggcttgggaaaatcaacacttgcaagagcaatctataatttggttg |
27697968 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 90; Significance: 1e-43; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 19 - 188
Target Start/End: Complemental strand, 28127231 - 28127062
Alignment:
| Q |
19 |
atcaatcatgttttcttaaatgtagccaaataccctgttgggttacagtcccgaatagaacaagtgaaattgcttcttgacaagggctctgaggatgagg |
118 |
Q |
| |
|
||||||| |||||||||| |||| |||||||| |||||||| |||||| || | || |||||||||| |||||||| || ||||| | ||| ||||||| |
|
|
| T |
28127231 |
atcaatcgtgttttcttacatgttgccaaatatcctgttggattacaggaccaagtacaacaagtgaatttgcttctcgataagggatatgatgatgagg |
28127132 |
T |
|
| Q |
119 |
tccgcatggtaggactttatggtactggaggcatgggtaaatcaacacttgcaaaagcagtttataattt |
188 |
Q |
| |
|
||| |||||||||||||||||||| ||||||| |||||||||||||||||||||||||| |||||||||| |
|
|
| T |
28127131 |
tccacatggtaggactttatggtattggaggcttgggtaaatcaacacttgcaaaagcaatttataattt |
28127062 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 19 - 188
Target Start/End: Complemental strand, 28163931 - 28163762
Alignment:
| Q |
19 |
atcaatcatgttttcttaaatgtagccaaataccctgttgggttacagtcccgaatagaacaagtgaaattgcttcttgacaagggctctgaggatgagg |
118 |
Q |
| |
|
||||||| |||||| ||| |||| || ||||| |||||||| ||||| || | | || ||||||||||||||||||| || ||||| | ||| ||||||| |
|
|
| T |
28163931 |
atcaatcgtgtttttttacatgttgcaaaatatcctgttggattacaatctcaagtacaacaagtgaaattgcttctcgataagggatatgatgatgagg |
28163832 |
T |
|
| Q |
119 |
tccgcatggtaggactttatggtactggaggcatgggtaaatcaacacttgcaaaagcagtttataattt |
188 |
Q |
| |
|
||| ||||||||||||||||| |||||||||| |||||||||||||||||||||||||| |||||||||| |
|
|
| T |
28163831 |
tccacatggtaggactttatgatactggaggcttgggtaaatcaacacttgcaaaagcaatttataattt |
28163762 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 33 - 189
Target Start/End: Complemental strand, 267882 - 267726
Alignment:
| Q |
33 |
cttaaatgtagccaaataccctgttgggttacagtcccgaatagaacaagtgaaattgcttcttgacaagggctctgaggatgaggtccgcatggtagga |
132 |
Q |
| |
|
|||| |||| ||||| ||||||||||| ||| ||| | | || |||||||||||||||||||||| || || ||||| |||| ||||| ||||| ||| |
|
|
| T |
267882 |
cttacatgttgccaattaccctgttggattatggtctcaagtacaacaagtgaaattgcttcttgataatggatctgatgatggggtccatatggttgga |
267783 |
T |
|
| Q |
133 |
ctttatggtactggaggcatgggtaaatcaacacttgcaaaagcagtttataatttt |
189 |
Q |
| |
|
||||||| | ||||||| ||||||||||||| ||||||| |||| | ||||||||| |
|
|
| T |
267782 |
atttatgggattggaggcttgggtaaatcaacccttgcaagagcaatctataatttt |
267726 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0419 (Bit Score: 77; Significance: 6e-36; HSPs: 1)
Name: scaffold0419
Description:
Target: scaffold0419; HSP #1
Raw Score: 77; E-Value: 6e-36
Query Start/End: Original strand, 33 - 189
Target Start/End: Original strand, 8127 - 8283
Alignment:
| Q |
33 |
cttaaatgtagccaaataccctgttgggttacagtcccgaatagaacaagtgaaattgcttcttgacaagggctctgaggatgaggtccgcatggtagga |
132 |
Q |
| |
|
|||| |||| ||||| ||||||||||| |||||||| ||| || |||| ||||||| ||||||||| | || ||||| |||| |||| |||||||||| |
|
|
| T |
8127 |
cttacatgttgccaattaccctgttggattacagtctcgagtacaacatgtgaaatcgcttcttgatgaaggatctgatgatggagtccacatggtagga |
8226 |
T |
|
| Q |
133 |
ctttatggtactggaggcatgggtaaatcaacacttgcaaaagcagtttataatttt |
189 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||| ||||||| ||||||||||| |
|
|
| T |
8227 |
ctttatggtactggaggcttgggtaaatcaacacttggaaaagcaatttataatttt |
8283 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0277 (Bit Score: 77; Significance: 6e-36; HSPs: 2)
Name: scaffold0277
Description:
Target: scaffold0277; HSP #1
Raw Score: 77; E-Value: 6e-36
Query Start/End: Original strand, 33 - 189
Target Start/End: Complemental strand, 13217 - 13061
Alignment:
| Q |
33 |
cttaaatgtagccaaataccctgttgggttacagtcccgaatagaacaagtgaaattgcttcttgacaagggctctgaggatgaggtccgcatggtagga |
132 |
Q |
| |
|
|||| |||| ||||| ||||||||||| |||||||| ||| || |||| ||||||| ||||||||| | || ||||| |||| |||| |||||||||| |
|
|
| T |
13217 |
cttacatgttgccaattaccctgttggattacagtctcgagtacaacatgtgaaatcgcttcttgatgaaggatctgatgatggagtccacatggtagga |
13118 |
T |
|
| Q |
133 |
ctttatggtactggaggcatgggtaaatcaacacttgcaaaagcagtttataatttt |
189 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||| ||||||| ||||||||||| |
|
|
| T |
13117 |
ctttatggtactggaggcttgggtaaatcaacacttggaaaagcaatttataatttt |
13061 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0277; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 33 - 189
Target Start/End: Complemental strand, 4254 - 4098
Alignment:
| Q |
33 |
cttaaatgtagccaaataccctgttgggttacagtcccgaatagaacaagtgaaattgcttcttgacaagggctctgaggatgaggtccgcatggtagga |
132 |
Q |
| |
|
|||| |||| ||||| ||||||||||| |||||||| ||| || |||| ||||||| ||||||||| | || ||||| ||| | || |||||||||| |
|
|
| T |
4254 |
cttacatgttgccaattaccctgttggattacagtctcgagtacaacatgtgaaatcgcttcttgatgaaggatctgatcatggagcccacatggtagga |
4155 |
T |
|
| Q |
133 |
ctttatggtactggaggcatgggtaaatcaacacttgcaaaagcagtttataatttt |
189 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||| ||||||| ||||||||||| |
|
|
| T |
4154 |
ctttatggtactggaggcttgggtaaatcaacacttggaaaagcaatttataatttt |
4098 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 73; Significance: 1e-33; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 73; E-Value: 1e-33
Query Start/End: Original strand, 33 - 189
Target Start/End: Complemental strand, 18698938 - 18698782
Alignment:
| Q |
33 |
cttaaatgtagccaaataccctgttgggttacagtcccgaatagaacaagtgaaattgcttcttgacaagggctctgaggatgaggtccgcatggtagga |
132 |
Q |
| |
|
|||| |||| ||||| ||||||||||| || ||||| ||| || ||||||||||| ||||||||| || || ||||| |||| ||||||||| ||||| |
|
|
| T |
18698938 |
cttacatgttgccaattaccctgttggattgcagtctcgagtacaacaagtgaaagcgcttcttgataaaggatctgatgatggagtccgcatgttagga |
18698839 |
T |
|
| Q |
133 |
ctttatggtactggaggcatgggtaaatcaacacttgcaaaagcagtttataatttt |
189 |
Q |
| |
|
|||||||| | ||||||||||||||||||||||||||| |||||| ||||||||||| |
|
|
| T |
18698838 |
ctttatggcattggaggcatgggtaaatcaacacttgcgaaagcaatttataatttt |
18698782 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 33 - 189
Target Start/End: Complemental strand, 18679098 - 18678942
Alignment:
| Q |
33 |
cttaaatgtagccaaataccctgttgggttacagtcccgaatagaacaagtgaaattgcttcttgacaagggctctgaggatgaggtccgcatggtagga |
132 |
Q |
| |
|
|||| |||| ||||| ||||||||||| || ||||| ||| || |||||||||||| ||||||||| | | ||| | |||| ||||||||||||||| |
|
|
| T |
18679098 |
cttacatgttgccaattaccctgttggattgcagtctcgagtacaacaagtgaaatcgcttcttgatgaatgatcttatgatggagtccgcatggtagga |
18678999 |
T |
|
| Q |
133 |
ctttatggtactggaggcatgggtaaatcaacacttgcaaaagcagtttataatttt |
189 |
Q |
| |
|
|||||||| | ||||||||||||||||| |||||||||||||||| ||||||||||| |
|
|
| T |
18678998 |
ctttatggcattggaggcatgggtaaattaacacttgcaaaagcaatttataatttt |
18678942 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 49 - 189
Target Start/End: Complemental strand, 18723607 - 18723467
Alignment:
| Q |
49 |
taccctgttgggttacagtcccgaatagaacaagtgaaattgcttcttgacaagggctctgaggatgaggtccgcatggtaggactttatggtactggag |
148 |
Q |
| |
|
|||||||||||||| ||||| ||| || |||||||||||| ||||||||| || || ||| | | || ||||||||| ||||||||||||||| ||||| |
|
|
| T |
18723607 |
taccctgttgggttgcagtctcgagtacaacaagtgaaatcgcttcttgataaaggatctaatggtggagtccgcatgataggactttatggtattggag |
18723508 |
T |
|
| Q |
149 |
gcatgggtaaatcaacacttgcaaaagcagtttataatttt |
189 |
Q |
| |
|
||||||| ||||||||||||||||||| | ||||||||||| |
|
|
| T |
18723507 |
gcatgggaaaatcaacacttgcaaaaggaatttataatttt |
18723467 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 49 - 187
Target Start/End: Complemental strand, 18654999 - 18654861
Alignment:
| Q |
49 |
taccctgttgggttacagtcccgaatagaacaagtgaaattgcttcttgacaagggctctgaggatgaggtccgcatggtaggactttatggtactggag |
148 |
Q |
| |
|
|||||||||||||| ||||| ||| || |||||||||||| ||||||||| || || ||||| | || ||||||||| ||||||||||||||| ||||| |
|
|
| T |
18654999 |
taccctgttgggttgcagtctcgagtacaacaagtgaaatcgcttcttgataaaggatctgatggtggagtccgcatgataggactttatggtattggag |
18654900 |
T |
|
| Q |
149 |
gcatgggtaaatcaacacttgcaaaagcagtttataatt |
187 |
Q |
| |
|
||||||| |||||||||||||||||| || || |||||| |
|
|
| T |
18654899 |
gcatgggaaaatcaacacttgcaaaatcaattaataatt |
18654861 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 49 - 189
Target Start/End: Complemental strand, 18731026 - 18730886
Alignment:
| Q |
49 |
taccctgttgggttacagtcccgaatagaacaagtgaaattgcttcttgacaagggctctgaggatgaggtccgcatggtaggactttatggtactggag |
148 |
Q |
| |
|
|||||||||||||| ||||| ||| || |||||||||||| ||||||||| || || ||| | | || ||||||||| ||||||||||||||| ||||| |
|
|
| T |
18731026 |
taccctgttgggttgcagtctcgagtacaacaagtgaaatcgcttcttgataaaggatcttatggtggagtccgcatgataggactttatggtattggag |
18730927 |
T |
|
| Q |
149 |
gcatgggtaaatcaacacttgcaaaagcagtttataatttt |
189 |
Q |
| |
|
||||||| |||||||||||||| |||| | ||||||||||| |
|
|
| T |
18730926 |
gcatgggaaaatcaacacttgctaaagtaatttataatttt |
18730886 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 49 - 193
Target Start/End: Original strand, 18074417 - 18074561
Alignment:
| Q |
49 |
taccctgttgggttacagtcccgaatagaacaagtgaaattgcttcttgacaagggctctgaggatgaggtccgcatggtaggactttatggtactggag |
148 |
Q |
| |
|
||||||||||| || ||||| ||| || |||||||||||| ||||||||| |||| |||| |||| ||||| ||||| ||| ||||||| | ||||| |
|
|
| T |
18074417 |
taccctgttggattgcagtctcgagtacaacaagtgaaatcgcttcttgatgagggacctgatgatggggtccatatggttggaatttatgggattggag |
18074516 |
T |
|
| Q |
149 |
gcatgggtaaatcaacacttgcaaaagcagtttataattttgttg |
193 |
Q |
| |
|
|| ||||||||||||||||||| |||| | ||||||||||||| |
|
|
| T |
18074517 |
gctcaggtaaatcaacacttgcaagagcaatctataattttgttg |
18074561 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0349 (Bit Score: 65; Significance: 9e-29; HSPs: 1)
Name: scaffold0349
Description:
Target: scaffold0349; HSP #1
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 33 - 189
Target Start/End: Complemental strand, 3081 - 2925
Alignment:
| Q |
33 |
cttaaatgtagccaaataccctgttgggttacagtcccgaatagaacaagtgaaattgcttcttgacaagggctctgaggatgaggtccgcatggtagga |
132 |
Q |
| |
|
|||| |||| ||||| ||||||||||| | |||| ||| || |||||||||||| ||||||||| | | ||||| |||| |||| |||||||||| |
|
|
| T |
3081 |
cttacatgttgccaattaccctgttggaatgaagtctcgagtacaacaagtgaaatcgcttcttgatgaaagatctgatgatggagtccacatggtagga |
2982 |
T |
|
| Q |
133 |
ctttatggtactggaggcatgggtaaatcaacacttgcaaaagcagtttataatttt |
189 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
2981 |
ctttatggtactggaggattgggtaaatcaacacttgcaaaagcaatttataatttt |
2925 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 49; Significance: 3e-19; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 49 - 193
Target Start/End: Original strand, 60225 - 60369
Alignment:
| Q |
49 |
taccctgttgggttacagtcccgaatagaacaagtgaaattgcttcttgacaagggctctgaggatgaggtccgcatggtaggactttatggtactggag |
148 |
Q |
| |
|
||||||||||| || ||||| ||| || |||||||||||| ||||||||| |||| |||| |||| ||||| ||||| ||| ||||||| | ||||| |
|
|
| T |
60225 |
taccctgttggattgcagtctcgagtacaacaagtgaaatcgcttcttgatgagggacctgatgatggggtccatatggttggaatttatgggattggag |
60324 |
T |
|
| Q |
149 |
gcatgggtaaatcaacacttgcaaaagcagtttataattttgttg |
193 |
Q |
| |
|
|| ||||||||||||||||||| |||| | ||||||||||||| |
|
|
| T |
60325 |
gctcaggtaaatcaacacttgcaagagcaatctataattttgttg |
60369 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 49; Significance: 3e-19; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 33 - 189
Target Start/End: Complemental strand, 29273380 - 29273224
Alignment:
| Q |
33 |
cttaaatgtagccaaataccctgttgggttacagtcccgaatagaacaagtgaaattgcttcttgacaagggctctgaggatgaggtccgcatggtagga |
132 |
Q |
| |
|
|||| |||| ||||||||||||||||| |||||||| | | || ||||||| |||| ||||||||| || || ||||| |||| | ||| ||||| ||| |
|
|
| T |
29273380 |
cttacatgttgccaaataccctgttggattacagtctcaagtacaacaagtcaaatcgcttcttgataatggatctgatgatgggatccatatggttgga |
29273281 |
T |
|
| Q |
133 |
ctttatggtactggaggcatgggtaaatcaacacttgcaaaagcagtttataatttt |
189 |
Q |
| |
|
||||||| | ||| ||| ||||||||||||| ||||||| |||| | ||||||||| |
|
|
| T |
29273280 |
atttatgggattggtggcttgggtaaatcaacccttgcaagagcaatctataatttt |
29273224 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 12217 times since January 2019
Visitors: 8179