View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1312_high_3 (Length: 526)
Name: NF1312_high_3
Description: NF1312
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1312_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 342; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 8 - 419
Target Start/End: Original strand, 21187042 - 21187444
Alignment:
| Q |
8 |
cgaagaatattggattgggatgggttacactgagagatgggttgcacgtaaactgcatcagtaggagcagctgtcctgcgttggtgactggccaagtaga |
107 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21187042 |
cgaagaaaattggattgggatgggttacactgagagatgggttggacgtaaactgcatcagtaggagcagctgtcctgcgttggtgactggccaagtaga |
21187141 |
T |
|
| Q |
108 |
taccggcaccgatagcgtcttcctcttcggcgccagtgtcgacaacatcgagattcttttctccacaggcagagcagtagtagaagccatccgattccaa |
207 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21187142 |
taccggcaccgatagcatcttcctcttcggcgccagtgtcgacaacatcgagattcttttctccacaggcagagcagtagtagaagccatccgattccaa |
21187241 |
T |
|
| Q |
208 |
agcttcaccctcataggtacagctttgacaagtaaatgtaacgacatcagccattgcaggagcaaaacctttgcaggaaatttttagatttcagtattat |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||| |
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| T |
21187242 |
agcttcaccctcataggtacagctttgacaagtaaatgtaacgacatcagccattgcaggagcaaaacctttgctggaaatttctagatttcagtattat |
21187341 |
T |
|
| Q |
308 |
tctgag-ctggatatacagggttgagaaacaaataagagaaaactaaagaaaaagatagatgggcacagaaatttgattgataattgttgtttagtcccc |
406 |
Q |
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|||| | |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
21187342 |
tctgggcctggatatacagggttgagaaacaaata----------aaagaaaaagatagatgggcacagaaatttgattgataattgttgtctagtcccc |
21187431 |
T |
|
| Q |
407 |
taaaattgctgaa |
419 |
Q |
| |
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||||||||||||| |
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| T |
21187432 |
taaaattgctgaa |
21187444 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 8 - 360
Target Start/End: Original strand, 27244981 - 27245334
Alignment:
| Q |
8 |
cgaagaatattggattgggatgggttacactgagagatgggttgcacgtaaactgcatcagtaggagcagctgtcctgcgttggtgactggccaagtaga |
107 |
Q |
| |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27244981 |
cgaagaaaattggattgggatgggttacactgagagatgggttgcacgtaaactgcatcagtaggagcagctgtcctgcgttggtgactggccaagtaga |
27245080 |
T |
|
| Q |
108 |
taccggcaccgatagcgtcttcctcttcggcgccagtgtcgacaacatcgagattcttttctccacaggcagagcagtagtagaagccatccgattccaa |
207 |
Q |
| |
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|||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27245081 |
taccggcaccgatagcatcttcctcttcggcgccagtgtcgacaacatcaagattcttttctccacaggcagagcagtagtagaagccatccgattccaa |
27245180 |
T |
|
| Q |
208 |
agcttcaccctcataggtacagctttgacaagtaaatgtaacgacatcagccattgcaggagcaaaacctttgcaggaaatttttagatttcagtattat |
307 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
27245181 |
agcttcaccctcataggtacagctttgacaagtaaatgtaaccacatcagccattggaggagcaaaacctttgctggaaatttttagatttcagtattat |
27245280 |
T |
|
| Q |
308 |
tctgag-ctggatatacagggttgagaaacaaataagagaaaactaaagaaaaa |
360 |
Q |
| |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27245281 |
tctgagcctggatatacagggttgagaaacaaataagagaaaactaaagaaaaa |
27245334 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 193; E-Value: 1e-104
Query Start/End: Original strand, 8 - 212
Target Start/End: Original strand, 27120446 - 27120650
Alignment:
| Q |
8 |
cgaagaatattggattgggatgggttacactgagagatgggttgcacgtaaactgcatcagtaggagcagctgtcctgcgttggtgactggccaagtaga |
107 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
27120446 |
cgaagaaaattggattgggatgggttacactgagagatgggttgcacgtaaactgcatcagtaggagcagctgtcctgcgttggtgactggccaagtaga |
27120545 |
T |
|
| Q |
108 |
taccggcaccgatagcgtcttcctcttcggcgccagtgtcgacaacatcgagattcttttctccacaggcagagcagtagtagaagccatccgattccaa |
207 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27120546 |
taccggcaccgatagcatcttcctcttcggcgccagtgtcgacaacatcaagattcttttctccacaggcagagcagtagtagaagccatccgattccaa |
27120645 |
T |
|
| Q |
208 |
agctt |
212 |
Q |
| |
|
||||| |
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|
| T |
27120646 |
agctt |
27120650 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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