View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1312_high_6 (Length: 437)

Name: NF1312_high_6
Description: NF1312
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1312_high_6
NF1312_high_6
[»] chr2 (1 HSPs)
chr2 (9-403)||(4239932-4240325)
[»] chr4 (1 HSPs)
chr4 (274-314)||(43006701-43006741)
[»] chr5 (2 HSPs)
chr5 (242-310)||(2818947-2819016)
chr5 (239-307)||(33155622-33155690)
[»] chr8 (2 HSPs)
chr8 (241-307)||(6863039-6863105)
chr8 (239-307)||(39785591-39785659)
[»] chr3 (1 HSPs)
chr3 (275-313)||(34756192-34756230)
[»] chr1 (1 HSPs)
chr1 (241-301)||(46315793-46315853)


Alignment Details
Target: chr2 (Bit Score: 335; Significance: 0; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 9 - 403
Target Start/End: Original strand, 4239932 - 4240325
Alignment:
Q  9 gaataatatcctagaataaaagattgaattatcacacagttacattcttcctttggatttaaaactgccactaaaggttatagtgatggggaactaaacc 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4239932 gaataatatcctagaataaaagattgaattatcacacagttacattcttcctttggatttaaaactgccactaaaggttatagtgatggggaactaaacc 4240031  T
Q  109 gtaggtataagaaatcatgagatgtcgttacagcatatacctacaggttgtaaaccgtaggtaaaaccgatgattttttccaacggttagaaaccatcac 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4240032 gtaggtataagaaatcatgagatgtcgttacagcatatacctacaggttgtaaaccgtaggtaaaaccgatgattttttccaacggttagaaaccatcac 4240131  T
Q  209 tatagatagtgccagttatatgatgaacaaacaagtgagacaaatcttacatcacatacatgttagttttcaccatttgatcaataaatctcacaattag 308  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||    
T  4240132 tatagatagtgccagttatatgatgaacaaacaagtgagacaaatcttacatcacatacatgttagttttcatcatttgatcaataaatctcataattag 4240231  T
Q  309 atcaaaataatatgatatttgtgcataatgtaagaccannnnnnnnnccggttgcatcataaaattagtgcaaaaccattttacttgtacatgtt 403  Q
    ||||||| ||||||||||||||||||| ||||||||||         ||| |||||||||||||||||||||||||||||||| |||| ||||||    
T  4240232 atcaaaagaatatgatatttgtgcatagtgtaagacca-ttttttttccgattgcatcataaaattagtgcaaaaccattttatttgtgcatgtt 4240325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 274 - 314
Target Start/End: Original strand, 43006701 - 43006741
Alignment:
Q  274 gttttcaccatttgatcaataaatctcacaattagatcaaa 314  Q
    |||||||||||||||||||||||||| ||||||||||||||    
T  43006701 gttttcaccatttgatcaataaatcttacaattagatcaaa 43006741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 242 - 310
Target Start/End: Original strand, 2818947 - 2819016
Alignment:
Q  242 agtgagacaaatctta-catcacatacatgttagttttcaccatttgatcaataaatctcacaattagat 310  Q
    |||| ||||||||||| ||||| | ||| ||||||||||| |||| |||||||||||||||| |||||||    
T  2818947 agtgtgacaaatcttatcatcatacacaagttagttttcatcattggatcaataaatctcaccattagat 2819016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 239 - 307
Target Start/End: Complemental strand, 33155690 - 33155622
Alignment:
Q  239 acaagtgagacaaatcttacatcacatacatgttagttttcaccatttgatcaataaatctcacaatta 307  Q
    ||||||||||||| |||| |||||   ||| | |||||||||||||| |||||||||||| ||| ||||    
T  33155690 acaagtgagacaagtcttgcatcatgcacaagctagttttcaccattggatcaataaatcccaccatta 33155622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 241 - 307
Target Start/End: Original strand, 6863039 - 6863105
Alignment:
Q  241 aagtgagacaaatcttacatcacatacatgttagttttcaccatttgatcaataaatctcacaatta 307  Q
    ||||||||||| |||| ||||| | ||| | |||||| ||||||| |||||||||||||||| ||||    
T  6863039 aagtgagacaagtcttgcatcatacacaagctagtttccaccattggatcaataaatctcaccatta 6863105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 239 - 307
Target Start/End: Original strand, 39785591 - 39785659
Alignment:
Q  239 acaagtgagacaaatcttacatcacatacatgttagttttcaccatttgatcaataaatctcacaatta 307  Q
    ||||||||||||| |||| |||||   | | | |||||||||||||| |||||||||||| ||||||||    
T  39785591 acaagtgagacaagtcttgcatcatgcataagctagttttcaccattggatcaataaatcccacaatta 39785659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 275 - 313
Target Start/End: Original strand, 34756192 - 34756230
Alignment:
Q  275 ttttcaccatttgatcaataaatctcacaattagatcaa 313  Q
    ||||||| ||| |||||||||||||||||||||||||||    
T  34756192 ttttcacgattggatcaataaatctcacaattagatcaa 34756230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 241 - 301
Target Start/End: Original strand, 46315793 - 46315853
Alignment:
Q  241 aagtgagacaaatcttacatcacatacatgttagttttcaccatttgatcaataaatctca 301  Q
    ||||||||||||||||||||||  || | |||||||||  | ||||||| |||||||||||    
T  46315793 aagtgagacaaatcttacatcatctataagttagttttagctatttgattaataaatctca 46315853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 11029 times since January 2019
Visitors: 8059