View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1312_low_1 (Length: 638)
Name: NF1312_low_1
Description: NF1312
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1312_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 564; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 564; E-Value: 0
Query Start/End: Original strand, 30 - 633
Target Start/End: Original strand, 6752671 - 6753273
Alignment:
| Q |
30 |
gtaatggctacggaagaaataagcaaaggatccaacatgtgtaataagcatgaaattaataatacaagtggtgtccacataaataatgatggttccaagg |
129 |
Q |
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| T |
6752671 |
gtaatggctacggaagaaataagcaaaggatccaacatgtgtaataagcatgaaattaataatacaagtggtgtccacataaataaggatggttccaagg |
6752770 |
T |
|
| Q |
130 |
ctagtgcaaatgttaactccatggctatggaaacgacgtagactgaggtgcactacattcctatatttcactaaggtacttatgactagttttaatgatt |
229 |
Q |
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| T |
6752771 |
ctagtgcaaatgtcaactccatggctatggaaacgacgtagactgaggtgcactacattcctttatttcactaaggtacttatgactagttttaatgatt |
6752870 |
T |
|
| Q |
230 |
tatctattcttagttggaattataaggggtgccgttaataaggagggtaagagacaaacccgagtccttattaaaagatataaacctttacttgttgttc |
329 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6752871 |
tatctattcttagttggaat-ataaggggtgccgttaataaggagggtaagagacgaacccgagtccttattaaaagatataaacctttacttgttgttc |
6752969 |
T |
|
| Q |
330 |
ttatggagacgcactgtcagtttgctatagttaaaaatttctggtgtaacctaggctatgaggattgtgcaatttctgaagctcgtggacactctggagg |
429 |
Q |
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| T |
6752970 |
ttatggagacgcactgtcagttttctagagttaaaaatttctggtgtaacctaggctatgaggattgtgcaatttctgaagctcgtggacactctggagg |
6753069 |
T |
|
| Q |
430 |
gatatggatattaaaatctcaaaattgcacatatgatattgagattatagataactattttcaatctatcactatagctctagaaaaggatagagtaagg |
529 |
Q |
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| T |
6753070 |
gatatggatattaaaatctcaaaattgcacatatgatattgagattatagataactattttcaatctatcactatagctctagaaaaggatagagtaagg |
6753169 |
T |
|
| Q |
530 |
tggtacttgtcaactatttatgctagccctcaggttacaaatcgtgaccatctttggtcctacttgaattccttacgacctcatcttaatggccctttgc |
629 |
Q |
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| T |
6753170 |
tggtacttgtcaactatttatgctagccctcaggttacaaatcgtgaccatctttggccctacttgaattccttacgacctcatcttaatggcccttggc |
6753269 |
T |
|
| Q |
630 |
ttct |
633 |
Q |
| |
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|||| |
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| T |
6753270 |
ttct |
6753273 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 450; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 450; E-Value: 0
Query Start/End: Original strand, 132 - 633
Target Start/End: Complemental strand, 1811761 - 1811261
Alignment:
| Q |
132 |
agtgcaaatgttaactccatggctatggaaacgacgtagactgaggtgcactacattcctatatttcactaaggtacttatgactagttttaatgattta |
231 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1811761 |
agtgcaaatgttaattccatggctatggaaacgacgtagactgaggtgcactacattcctatatttcactaaggtacttatgactagttttaatgattta |
1811662 |
T |
|
| Q |
232 |
tctattcttagttggaattataaggggtgccgttaataaggagggtaagagacaaacccgagtccttattaaaagatataaacctttacttgttgttctt |
331 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1811661 |
tctattcttagttggaat-ataaggggtgccgttaataaggagggtaagagacaaacccgagtccttattaaaagatataaacctttacttgttgttctt |
1811563 |
T |
|
| Q |
332 |
atggagacgcactgtcagtttgctatagttaaaaatttctggtgtaacctaggctatgaggattgtgcaatttctgaagctcgtggacactctggaggga |
431 |
Q |
| |
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||||||||||||| ||||||| ||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| | |
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| T |
1811562 |
atggagacgcactctcagttttctagagttaaaaatttctggtgtaacctaggctatgagaattgtgcaatttctgaagctcgtggacactctggaggta |
1811463 |
T |
|
| Q |
432 |
tatggatattaaaatctcaaaattgcacatatgatattgagattatagataactattttcaatctatcactatagctctagaaaaggatagagtaaggtg |
531 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1811462 |
tatggatattaaaatctcaaaattgcacatatgatattgagattatagataactattttcaatctatcactatagctctagaaaaggatagagtaaggtg |
1811363 |
T |
|
| Q |
532 |
gtacttgtcaactatttatgctagccctcaggttacaaatcgtgaccatctttggtcctacttgaattccttacgacctcatcttaatggccctttgctt |
631 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| ||||||||||||||||||||| |||| |||| |
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| T |
1811362 |
gtacttgtcaactatttatgctagccctcaggttacaaatcgtgatcatctttggtcctatttgaattgcttacgacctcatcttaatggtccttggctt |
1811263 |
T |
|
| Q |
632 |
ct |
633 |
Q |
| |
|
|| |
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|
| T |
1811262 |
ct |
1811261 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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