View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1312_low_10 (Length: 425)
Name: NF1312_low_10
Description: NF1312
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1312_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 101; Significance: 6e-50; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 46737247 - 46737351
Alignment:
| Q |
1 |
ctaccacctttgcttctaagagcaactcaatcttatatcctttgctataggttaattttaaacctacgaacgcaccccatatctcagccatataagcact |
100 |
Q |
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| T |
46737247 |
ctaccacctttgcttctaagagcaactcaatcttatatcctttgctataggttaattttaaacctacgaacgcaccccatatctcagccatataagcacc |
46737346 |
T |
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| Q |
101 |
acatc |
105 |
Q |
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||||| |
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| T |
46737347 |
acatc |
46737351 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 336 - 396
Target Start/End: Original strand, 46737478 - 46737538
Alignment:
| Q |
336 |
gaaaaattgtagccgatattcaatctttaccacattcaaccaaacaaccaaagctagtggg |
396 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46737478 |
gaaaaattgtagccgatattcaatctttaccacattcaaccaaacaaccaaagctagtggg |
46737538 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 101 - 145
Target Start/End: Original strand, 46737412 - 46737456
Alignment:
| Q |
101 |
acatcctgctcgcctatcttcttcccggaggaggtggtcatctaa |
145 |
Q |
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| T |
46737412 |
acatcctgctcgcctaccttcttcccggaggaggtggtcatctaa |
46737456 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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