View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1312_low_13 (Length: 406)
Name: NF1312_low_13
Description: NF1312
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1312_low_13 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 350; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 30 - 406
Target Start/End: Original strand, 11592358 - 11592735
Alignment:
| Q |
30 |
cgccgagtattttggttgcctgaggtgtccctcagatacaaggtagagactaattgtccgaggtacggagattcacccaagagaacacatcttttaacag |
129 |
Q |
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| T |
11592358 |
cgccgagtattttggttgcatgaggtgtccctcagatacaaggtagagactaattgtccgaggtacggagattcacccaagagaacacatcttttaacag |
11592457 |
T |
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| Q |
130 |
gggttcttccttagacacttgctaacgatcgaatctttgaccatatgctcaagg-cacaattttccatcaaccatgccacaatatgatgatccattacat |
228 |
Q |
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| T |
11592458 |
gggttcttccttagacacttgctaacgatcgaatctttgaccatatgcttaagggcacaattttctatcaaccatgccacaatatgatgatccattacat |
11592557 |
T |
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| Q |
229 |
caagtttggttcaacttttatgttgctaaatgacaaggtcctaaaatctcattggctaaataaaaaggagtactaacaatatatgggaacctaaatagta |
328 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||| |
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| T |
11592558 |
caagtttggttcaacttttatgttgctaaatgacaaggtcctaaaatctcattggctaaataaaaaggattactaactatatatgggaacctaaatagta |
11592657 |
T |
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| Q |
329 |
aataacattcccattgaaggatttcttatcaattattatagctatcaaaatgaaatgaaccacaaagaaaagagtttg |
406 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11592658 |
aataacattcccattgaaggatttcttatcaattattatagctatcaaaatgaaatgaaccacaaagaaaagagtttg |
11592735 |
T |
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