View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1312_low_14 (Length: 379)
Name: NF1312_low_14
Description: NF1312
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1312_low_14 |
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Alignment Details
Target: chr5 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 52 - 297
Target Start/End: Original strand, 42018327 - 42018572
Alignment:
| Q |
52 |
gctgtatcggtcactatcgcctataactgttacaaacaattgacataggaggaatcaactttgtcagtgttattattatttaggtcagtttgcttaagct |
151 |
Q |
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| T |
42018327 |
gctgtatcggtcactatcgcctataactgctacaaacaattgacataggaggaatcaactttgtcagtgttattattatttaggtcagtttgcttaagct |
42018426 |
T |
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| Q |
152 |
ttaacatatttacatttatatcagcttcatgtttttgatgcttctgctgttatttagatcaatccttattggacatgcagggaacgagtgggagctcaat |
251 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42018427 |
ttaacatatttacatttatatcagcttcatgtttttgatgcttctgctgttatttagatcaatccttattggacatgcagggaacgagtgggagctcaat |
42018526 |
T |
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| Q |
252 |
cgttaatgtgaatttgtgtgctttactgattgtggaatattattgg |
297 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42018527 |
cgttaatgtgaatttgtgtgctttactgattgtggaatattattgg |
42018572 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 238; Significance: 1e-131; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 52 - 297
Target Start/End: Original strand, 1251547 - 1251792
Alignment:
| Q |
52 |
gctgtatcggtcactatcgcctataactgttacaaacaattgacataggaggaatcaactttgtcagtgttattattatttaggtcagtttgcttaagct |
151 |
Q |
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||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1251547 |
gctgtatcggtcactatcgcctataactgctgcaaacaattgacataggaggaatcaactttgtcagtgttattattatttaggtcagtttgcttaagct |
1251646 |
T |
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| Q |
152 |
ttaacatatttacatttatatcagcttcatgtttttgatgcttctgctgttatttagatcaatccttattggacatgcagggaacgagtgggagctcaat |
251 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1251647 |
ttaacatatttacatttatatcagcttcatgtttttgatgcttctgctgttatttagatcaatccttattggacatgcagggaacgagtgggagctcaat |
1251746 |
T |
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| Q |
252 |
cgttaatgtgaatttgtgtgctttactgattgtggaatattattgg |
297 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1251747 |
cgttaatgtgaatttgtgtgctttactgattgtggaatattattgg |
1251792 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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