View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1312_low_16 (Length: 358)
Name: NF1312_low_16
Description: NF1312
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1312_low_16 |
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Alignment Details
Target: chr2 (Bit Score: 193; Significance: 1e-105; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 129 - 329
Target Start/End: Complemental strand, 40010973 - 40010773
Alignment:
| Q |
129 |
acctttgcgtccatttcatccattaaaggaacttgacgttctatttcctgaacatagttgatgcgaaaagaaagagaaaatgattatcctcttaaaatca |
228 |
Q |
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| T |
40010973 |
acctttgcgtccatttcatccattaaaggaacttgacgttctatttcctgaacatagtcgaggcgaaaagaaagagaaaatgattatcctcttaaaatca |
40010874 |
T |
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| Q |
229 |
aacatttccaagtggaattactagaaagacaagattcgtaacctcattcatatcaagggctagatttttcaaagtatccaatccttctgatatgatatca |
328 |
Q |
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| T |
40010873 |
aacatttccaagtggaattactagaaagacaagattcgtaacctcattcatatcaagggctagatttttcaaagtatccaatccttctgatatgatatca |
40010774 |
T |
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| Q |
329 |
a |
329 |
Q |
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| T |
40010773 |
a |
40010773 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 9 - 98
Target Start/End: Complemental strand, 40011074 - 40010985
Alignment:
| Q |
9 |
agcagagagcaccttgtaatgtatttacttacatacttgcaatattactttgcaaagttatttattccaatatagaaaaagcaagattga |
98 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40011074 |
agcacagagcaccttgtaatgtatttacttacatacttgcaatattactttgcaaagttatttattccaatatagaaaaagcaagattga |
40010985 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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