View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1312_low_17 (Length: 341)
Name: NF1312_low_17
Description: NF1312
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1312_low_17 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 229; Significance: 1e-126; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 109 - 341
Target Start/End: Complemental strand, 49510546 - 49510314
Alignment:
| Q |
109 |
aagttttgttggtggtattgatctttgtgatgggagatatgataccatggaacatcctttgttttcaactctgaatacaattcatcatgatgattttcat |
208 |
Q |
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| T |
49510546 |
aagttttgttggtggtattgatctttgtgatgggagatatgataccatggaacatcctttgttttcaactctgaatacaattcatcatgatgattttcat |
49510447 |
T |
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| Q |
209 |
caaccaaatttcccaggtgattttggaactagttttataattaatcacataaaagatatgtttgatacatagatataatattacaattatatattagtgt |
308 |
Q |
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| T |
49510446 |
caaccaaatttcccaggtgattttggaactagttttataattaatcacataaaagatatgtttgatacatagatataatattacaatcatatattagtgt |
49510347 |
T |
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| Q |
309 |
agaagtcaaataaacatatgagcatgcatatct |
341 |
Q |
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| T |
49510346 |
agaagtcaaataaacatatgagcatgcatatct |
49510314 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 122 - 227
Target Start/End: Complemental strand, 49521483 - 49521378
Alignment:
| Q |
122 |
ggtattgatctttgtgatgggagatatgataccatggaacatcctttgttttcaactctgaatacaattcatcatgatgattttcatcaaccaaatttcc |
221 |
Q |
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| T |
49521483 |
ggtattgatctttgcgatggaagatatgatacaatggaacatcctttgttttcaacattgaatacaatccatcatgatgattttcatcaaccaaatttcc |
49521384 |
T |
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| Q |
222 |
caggtg |
227 |
Q |
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| T |
49521383 |
caggtg |
49521378 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 293 - 339
Target Start/End: Original strand, 26922392 - 26922438
Alignment:
| Q |
293 |
aattatatattagtgtagaagtcaaataaacatatgagcatgcatat |
339 |
Q |
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| T |
26922392 |
aattatattttagtgtggaagtcaaataaacatgtgagcatgtatat |
26922438 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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