View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend |
| Query |
| Query hiting target |
| Query hiting target's complemental strand |
| Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1312_low_18 (Length: 329)
Name: NF1312_low_18
Description: NF1312
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[»] NF1312_low_18 |
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[»] scaffold0042 (1 HSPs) |
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[»] scaffold0005 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 224; Significance: 1e-123; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 43 - 298
Target Start/End: Original strand, 26228261 - 26228516
Alignment:
Q |
43 |
aacaatattatctcagtttattttacggattaatcccgagtggagtaaccccggaagttaatcccttacttgaccgatgaaaacctagctaaggaacatc |
142 |
Q |
|
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||| |
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|
T |
26228261 |
aacaatattatctcagtttattttacggattaatcccgagtggagtaaccccgaaagttaatcccttacttgaccgatgaaaacctagctaaggtacatc |
26228360 |
T |
|
Q |
143 |
ggactccctcagttacgtgcgggcctaccttgcggagcgtatcccgttccccttggagaacctctcgtatccccgttggcgtggataactgaaagacacg |
242 |
Q |
|
|
|||||||||| || ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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|
T |
26228361 |
ggactccctcggtgacgtgcgggcctaccatgcggagcgtatcccgttccccttggagaacctctcgtatcccccttggcgtggataactgaaagacacg |
26228460 |
T |
|
Q |
243 |
atacctaaatcttactttatggtcttgaccatatatattaacttgtcttagtactt |
298 |
Q |
|
|
| ||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
T |
26228461 |
acacctacatcttactttatggtcttgaccatatatattaacttgtcttagtactt |
26228516 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 102 - 195
Target Start/End: Original strand, 9345439 - 9345532
Alignment:
Q |
102 |
aatcccttacttgaccgatgaaaacctagctaaggaacatcggactccctcagttacgtgcgggcctaccttgcggagcgtatcccgttcccct |
195 |
Q |
|
|
|||||| ||| |||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||| |||||| ||||| |
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|
T |
9345439 |
aatcccatacatgaccgatgaaaacctagctaaggtacatcggactccctcagtgtcgtgcgggcctaccttgcggagcgtgtcccgtccccct |
9345532 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 102 - 229
Target Start/End: Original strand, 16262098 - 16262224
Alignment:
Q |
102 |
aatcccttacttgaccgatgaaaacctagctaaggaacatcggactccctcagttacgtgcgggcctaccttgcggagcgtatcccgttccccttg-gag |
200 |
Q |
|
|
|||||||||| |||||||||||| ||||||||||| |||||||||||||||||| |||||||||||||||||| |||||| |||||| ||||| | | | |
|
|
T |
16262098 |
aatcccttacatgaccgatgaaa-cctagctaaggtacatcggactccctcagtgtcgtgcgggcctaccttgcagagcgtgtcccgtccccctggcgtg |
16262196 |
T |
|
Q |
201 |
aacctctcgtatccccgttggcgtggata |
229 |
Q |
|
|
||||||| |||||||| |||||||||||| |
|
|
T |
16262197 |
aacctcttgtatcccc-ttggcgtggata |
16262224 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 159 - 243
Target Start/End: Original strand, 21082705 - 21082789
Alignment:
Q |
159 |
gtgcgggcctaccttgcggagcgtatcccgttcccct-tggagaacctctcgtatccccgttggcgtggataactgaaagacacga |
243 |
Q |
|
|
||||||||||||||||||||||||||||||| ||||| | ||| ||||||||| ||| ||| ||||||||| ||||||||||| |
|
|
T |
21082705 |
gtgcgggcctaccttgcggagcgtatcccgtccccctaacgtgaaactctcgtat-ccctctggagtggataacggaaagacacga |
21082789 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 63 - 98
Target Start/End: Complemental strand, 15593897 - 15593862
Alignment:
Q |
63 |
ttttacggattaatcccgagtggagtaaccccggaa |
98 |
Q |
|
|
||||| |||||||||||||||||||||||||||||| |
|
|
T |
15593897 |
ttttatggattaatcccgagtggagtaaccccggaa |
15593862 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 193; Significance: 1e-105; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 43 - 298
Target Start/End: Original strand, 22805732 - 22805988
Alignment:
Q |
43 |
aacaatattatctcagtttattttacggattaatcccgagtggagtaaccccggaagttaatcccttacttgaccgatgaaaacctagctaaggaacatc |
142 |
Q |
|
|
||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| |
|
|
T |
22805732 |
aacaatattatctgagttcattttacggattaatcccgagtggagtaaccccggaagttaatcccttacttgaccgatgaaaacctagctaaagtacatc |
22805831 |
T |
|
Q |
143 |
ggactccctcagttacgtgcgggcctaccttgcggagcgtatcccgttccccttg-gagaacctctcgtatccccgttggcgtggataactgaaagacac |
241 |
Q |
|
|
||||||||||||| || |||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||| ||||||| |||||| ||||||||| |
|
|
T |
22805832 |
ggactccctcagtgacatgcgggcctaccttgcggagcgtatcacgttccccttgtgagaacctctcgtatcccccttggcgttgataacggaaagacac |
22805931 |
T |
|
Q |
242 |
gatacctaaatcttactttatggtcttgaccatatatattaacttgtcttagtactt |
298 |
Q |
|
|
|| ||||| |||||||||||||||||||||||||| | ||||||||||||||||||| |
|
|
T |
22805932 |
gacacctacatcttactttatggtcttgaccatatgtgttaacttgtcttagtactt |
22805988 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 43 - 298
Target Start/End: Original strand, 21950483 - 21950738
Alignment:
Q |
43 |
aacaatattatctcagtttattttacggattaatcccgagtggagtaaccccggaagttaatcccttacttgaccgatgaaaacctagctaaggaacatc |
142 |
Q |
|
|
||||||||||||| |||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
T |
21950483 |
aacaatattatctgagttcattttacagattaatcccgagtggagtaaccccggaagttaatcccttacttgaccgatgaaaacctagctaaggtacatc |
21950582 |
T |
|
Q |
143 |
ggactccctcagttacgtgcgggcctaccttgcggagcgtatcccgttccccttg-gagaacctctcgtatccccgttggcgtggataactgaaagacac |
241 |
Q |
|
|
||||| ||||| || ||| ||||||||||| |||||||||||||||||||||| ||||||||||||||||||| |||||||||||||| ||||||||| |
|
|
T |
21950583 |
ggacttcctcaacgacttgcaggcctaccttgtggagcgtatcccgttccccttgtgagaacctctcgtatcccccttggcgtggataacggaaagacac |
21950682 |
T |
|
Q |
242 |
gatacctaaatcttactttatggtcttgaccatatatattaacttgtcttagtactt |
298 |
Q |
|
|
|| ||||| |||||||||||||||||||||||| ||| | |||||||||||||||| |
|
|
T |
21950683 |
gacacctacatcttactttatggtcttgaccatgtatgat-acttgtcttagtactt |
21950738 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 69 - 298
Target Start/End: Original strand, 19243655 - 19243884
Alignment:
Q |
69 |
ggattaatcccgagtggagtaaccccggaagttaatcccttacttgaccgatgaaaacctagctaaggaacatcggactccctcagttacgtgcgggcct |
168 |
Q |
|
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| | ||| |||||||||||| ||||||| |||| |
|
|
T |
19243655 |
ggattaatcccgagtggagtaaccccggaagttaatcccttacttgaccgacgaaaacctagctaaggtatatcagactccctcagtgacgtgcgagcct |
19243754 |
T |
|
Q |
169 |
accttgcggagcgtatcccgttccccttg-gagaacctctcgtatccccgttggcgtggataactgaaagacacgatacctaaatcttactttatggtct |
267 |
Q |
|
|
||| ||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||| | |||||||||| ||||| ||||||||||||||||| |
|
|
T |
19243755 |
accatgcggagcgtatcccgttccccttgtgagaacctctcgtatcccccttggcgtggatagcataaagacacgacacctacatcttactttatggtct |
19243854 |
T |
|
Q |
268 |
tgaccatatatattaacttgtcttagtactt |
298 |
Q |
|
|
||||||||||| | |||||||||||||||| |
|
|
T |
19243855 |
tgaccatatatgat-acttgtcttagtactt |
19243884 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 43 - 184
Target Start/End: Original strand, 3575679 - 3575820
Alignment:
Q |
43 |
aacaatattatctcagtttattttacggattaatcccgagtggagtaaccccggaagttaatcccttacttgaccgatgaaaacctagctaaggaacatc |
142 |
Q |
|
|
||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||| |
|
|
T |
3575679 |
aacaatattatctgagttcattttacggattaatcccgagtggagtaaccccggaagttaataccttacttgaccgatgaaaacctagctaaggtacatc |
3575778 |
T |
|
Q |
143 |
ggactccctcagttacgtgcgggcctaccttgcggagcgtat |
184 |
Q |
|
|
||||||||||||| ||||||||||||||||||| |||||||| |
|
|
T |
3575779 |
ggactccctcagtgacgtgcgggcctaccttgcagagcgtat |
3575820 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 102 - 195
Target Start/End: Original strand, 22801006 - 22801099
Alignment:
Q |
102 |
aatcccttacttgaccgatgaaaacctagctaaggaacatcggactccctcagttacgtgcgggcctaccttgcggagcgtatcccgttcccct |
195 |
Q |
|
|
|||||| ||||| || ||||||||||||| |||| | ||| |||||||||||| ||||||||||||||||| |||||||||||||| ||||| |
|
|
T |
22801006 |
aatcccatactttgccaatgaaaacctagcgaaggtatatcagactccctcagtgtcgtgcgggcctaccttgtggagcgtatcccgtccccct |
22801099 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 158 - 216
Target Start/End: Original strand, 7465218 - 7465277
Alignment:
Q |
158 |
cgtgcgggcctaccttgcggagcgtatcccgttcccct-tggagaacctctcgtatcccc |
216 |
Q |
|
|
|||||||||||||||||||||||||||| ||| ||||| | ||||||||||||||||| |
|
|
T |
7465218 |
cgtgcgggcctaccttgcggagcgtatctcgtccccctaacgtgaacctctcgtatcccc |
7465277 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 168 - 243
Target Start/End: Complemental strand, 381174 - 381100
Alignment:
Q |
168 |
taccttgcggagcgtatcccgttcccct-tggagaacctctcgtatccccgttggcgtggataactgaaagacacga |
243 |
Q |
|
|
|||||||| ||| ||||||||||||||| | ||||||||||||||||| ||||||||||||| |||||| |||| |
|
|
T |
381174 |
taccttgcagagtgtatcccgttcccctaacgtgaacctctcgtatcccc--tggcgtggataacggaaagagacga |
381100 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 180; Significance: 3e-97; HSPs: 9)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 43 - 298
Target Start/End: Original strand, 28086475 - 28086729
Alignment:
Q |
43 |
aacaatattatctcagtttattttacggattaatcccgagtggagtaaccccggaagttaatcccttacttgaccgatgaaaacctagctaaggaacatc |
142 |
Q |
|
|
||||| ||||||| ||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
T |
28086475 |
aacaacattatcttggttcattttacggattaatcccgggtggagtaaccccggaagttaatcccttacttgaccgatgaaaacctagctaaggtacatc |
28086574 |
T |
|
Q |
143 |
ggactccctcagttacgtgcgggcctaccttgcggagcgtatcccgttccccttggagaacctctcgtatccccgttggcgtggataactgaaagacacg |
242 |
Q |
|
|
|||||||||| || ||||||||||||||||| ||||||||||||| || ||||||||||||||||||||||||| |||||||||||||| |||||||||| |
|
|
T |
28086575 |
ggactccctctgtgacgtgcgggcctaccttacggagcgtatcccatttcccttggagaacctctcgtatcccccttggcgtggataacggaaagacacg |
28086674 |
T |
|
Q |
243 |
atacctaaatcttactttatggtcttgaccatatatattaacttgtcttagtactt |
298 |
Q |
|
|
| ||||| |||||||||||||||||||||||||||| | |||||||||||||||| |
|
|
T |
28086675 |
acacctacatcttactttatggtcttgaccatatatgat-acttgtcttagtactt |
28086729 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 104 - 243
Target Start/End: Complemental strand, 14283134 - 14282995
Alignment:
Q |
104 |
tcccttacttgaccgatgaaaacctagctaaggaacatcggactcc-ctcagttacgtgcgggcctaccttgcggagcgtatcccgttccccttggagaa |
202 |
Q |
|
|
|||||||||| ||||||||| | ||||||||| ||||||||||| || | | ||||| ||||||||||||||||||||||| ||||||||||||||| |
|
|
T |
14283134 |
tcccttactt-accgatgaattcttagctaaggtgcatcggactcctcttaatgccgtgcaggcctaccttgcggagcgtatcctgttccccttggagaa |
14283036 |
T |
|
Q |
203 |
cctctcgtatccccgttggcgtggataactgaaagacacga |
243 |
Q |
|
|
|||||||||||||| |||||||||||||| ||||||||||| |
|
|
T |
14283035 |
cctctcgtatcccccttggcgtggataacggaaagacacga |
14282995 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 102 - 229
Target Start/End: Original strand, 10668946 - 10669073
Alignment:
Q |
102 |
aatcccttacttgaccgatgaaaacctagctaaggaacatcggactccctcagttacgtgcgggcctaccttgcggagcgtatcccgttccccttg-gag |
200 |
Q |
|
|
|||||||||| ||||||||||||||||| ||||| |||||||||||||||||| |||||||| |||||||||||||||| ||| |||||||| | | | |
|
|
T |
10668946 |
aatcccttacacgaccgatgaaaacctagataaggtacatcggactccctcagtgtcgtgcgggtctaccttgcggagcgtgtcctgttcccctggcgtg |
10669045 |
T |
|
Q |
201 |
aacctctcgtatccccgttggcgtggata |
229 |
Q |
|
|
||||||| |||||||| ||||||||||| |
|
|
T |
10669046 |
aacctcttgtatcccc-ctggcgtggata |
10669073 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 102 - 229
Target Start/End: Complemental strand, 10702100 - 10701973
Alignment:
Q |
102 |
aatcccttacttgaccgatgaaaacctagctaaggaacatcggactccctcagttacgtgcgggcctaccttgcggagcgtatcccgttccccttg-gag |
200 |
Q |
|
|
|||||||||| |||||||||||||||||| ||||| ||||| |||||||||||| |||||||| |||||||||||||||| ||| |||||||| | | | |
|
|
T |
10702100 |
aatcccttacatgaccgatgaaaacctaggtaaggtacatcagactccctcagtgtcgtgcgggtctaccttgcggagcgtgtcctgttcccctggcgtg |
10702001 |
T |
|
Q |
201 |
aacctctcgtatccccgttggcgtggata |
229 |
Q |
|
|
||||||| |||||||| ||||||||||| |
|
|
T |
10702000 |
aacctcttgtatcccc-ctggcgtggata |
10701973 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 102 - 229
Target Start/End: Original strand, 10882585 - 10882712
Alignment:
Q |
102 |
aatcccttacttgaccgatgaaaacctagctaaggaacatcggactccctcagttacgtgcgggcctaccttgcggagcgtatcccgttccccttg-gag |
200 |
Q |
|
|
|||||||||| ||||||||||||||||| ||||| |||||||||||||||||| |||||||| |||||||||||||||| ||| |||||||| | | | |
|
|
T |
10882585 |
aatcccttacacgaccgatgaaaacctagataaggtacatcggactccctcagtgtcgtgcgggtctaccttgcggagcgtgtcctgttcccctggcgtg |
10882684 |
T |
|
Q |
201 |
aacctctcgtatccccgttggcgtggata |
229 |
Q |
|
|
||||||| |||||||| ||||||||||| |
|
|
T |
10882685 |
aacctcttgtatcccc-ctggcgtggata |
10882712 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 102 - 229
Target Start/End: Complemental strand, 10915870 - 10915743
Alignment:
Q |
102 |
aatcccttacttgaccgatgaaaacctagctaaggaacatcggactccctcagttacgtgcgggcctaccttgcggagcgtatcccgttccccttg-gag |
200 |
Q |
|
|
|||||||||| |||||||||||||||||| ||||| ||||| |||||||||||| |||||||| |||||||||||||||| ||| |||||||| | | | |
|
|
T |
10915870 |
aatcccttacatgaccgatgaaaacctaggtaaggtacatcagactccctcagtgtcgtgcgggtctaccttgcggagcgtgtcctgttcccctggcgtg |
10915771 |
T |
|
Q |
201 |
aacctctcgtatccccgttggcgtggata |
229 |
Q |
|
|
||||||| |||||||| ||||||||||| |
|
|
T |
10915770 |
aacctcttgtatcccc-ctggcgtggata |
10915743 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 102 - 216
Target Start/End: Original strand, 11169684 - 11169799
Alignment:
Q |
102 |
aatcccttacttgaccgatgaaaacctagctaaggaacatcggactccctcagttacgtgcgggcctaccttgcggagcgtatcccgttccccttg-gag |
200 |
Q |
|
|
|||||| ||| ||||| ||||||||||| |||||| |||||||||||| ||||| ||||||| || |||||||||||| | |||||||||||| | | | |
|
|
T |
11169684 |
aatcccatacatgacctatgaaaacctaactaaggtacatcggactccttcagtgtcgtgcggacccaccttgcggagcttgtcccgttcccctggtgtg |
11169783 |
T |
|
Q |
201 |
aacctctcgtatcccc |
216 |
Q |
|
|
||||||| |||||||| |
|
|
T |
11169784 |
aacctcttgtatcccc |
11169799 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 102 - 229
Target Start/End: Complemental strand, 14817443 - 14817315
Alignment:
Q |
102 |
aatcccttacttgaccgatgaaaacctagctaaggaacatcggactcc-ctcagttacgtgcgggcctaccttgcggagcgtatcccgttcccct-tgga |
199 |
Q |
|
|
|||||| ||| ||||||||||| ||||||||||| |||||||||||| ||| || ||||| ||||||||||| ||||||| |||||||||||| || |
|
|
T |
14817443 |
aatcccatacatgaccgatgaattcctagctaaggtacatcggactcctctcggtgccgtgcaggcctaccttgtggagcgtgtcccgttcccctgaggt |
14817344 |
T |
|
Q |
200 |
gaacctctcgtatccccgttggcgtggata |
229 |
Q |
|
|
|||||||| |||||||| ||||||||||| |
|
|
T |
14817343 |
gaacctcttgtatcccc-ctggcgtggata |
14817315 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 63 - 91
Target Start/End: Original strand, 22674735 - 22674763
Alignment:
Q |
63 |
ttttacggattaatcccgagtggagtaac |
91 |
Q |
|
|
||||||||||||||||||||||||||||| |
|
|
T |
22674735 |
ttttacggattaatcccgagtggagtaac |
22674763 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 154; Significance: 1e-81; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 43 - 295
Target Start/End: Complemental strand, 43516793 - 43516541
Alignment:
Q |
43 |
aacaatattatctcagtttattttacggattaatcccgagtggagtaaccccggaagttaatcccttacttgaccgatgaaaacctagctaaggaacatc |
142 |
Q |
|
|
||||||||||| | |||| ||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
T |
43516793 |
aacaatattatatgagttcattttacagattaatcccgagtggagtaacctcggaagttaatcccttacttgaccgatgaaaacctagctaaggtacatc |
43516694 |
T |
|
Q |
143 |
ggactccctcagttacgtgcgggcctaccttgcggagcgtatcccgttccccttg-gagaacctctcgtatccccgttggcgtggataactgaaagacac |
241 |
Q |
|
|
|||||||||||| |||||||||||||||||||||| ||||| ||||||||||| |||||||| || ||||||| |||| ||||||||| ||||||||| |
|
|
T |
43516693 |
agactccctcagtggcgtgcgggcctaccttgcggagtgtatctcgttccccttgtgagaacctgtcatatccccattggtgtggataacggaaagacac |
43516594 |
T |
|
Q |
242 |
gatacctaaatcttactttatggtcttgaccatatatattaacttgtcttagta |
295 |
Q |
|
|
|| || || |||||||||||||||||||||||||||| | ||||||||||||| |
|
|
T |
43516593 |
gacacttacatcttactttatggtcttgaccatatatgat-acttgtcttagta |
43516541 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 79 - 298
Target Start/End: Complemental strand, 24058025 - 24057806
Alignment:
Q |
79 |
cgagtggagtaaccccggaagtt-aatcccttacttgaccgatgaaaacctagctaaggaacatcggactccctcagttacgtgcgggcctaccttgcgg |
177 |
Q |
|
|
||||||||||||||||| ||| |||||||||||||||||||||||| |||||||||| ||||| ||||||||| || ||||||||||||||||| ||| |
|
|
T |
24058025 |
cgagtggagtaaccccg--agtacaatcccttacttgaccgatgaaaatctagctaaggtacatcagactccctcggtgacgtgcgggcctaccttacgg |
24057928 |
T |
|
Q |
178 |
agcgtatcccgttccccttg-gagaacctctcgtatccccgttggcgtggataactgaaagacacgatacctaaatcttactttatggtcttgaccatat |
276 |
Q |
|
|
|||||||| ||||||||| | |||||||||||||||||| |||| ||||||||| ||||||||||| ||||| |||||||| ||||||||||||||||| |
|
|
T |
24057927 |
agcgtatctcgttcccctagcgagaacctctcgtatccctcttggtgtggataacggaaagacacgacacctacatcttactctatggtcttgaccatat |
24057828 |
T |
|
Q |
277 |
atattaacttgtcttagtactt |
298 |
Q |
|
|
|| || ||||| ||||||||| |
|
|
T |
24057827 |
atgatagcttgttttagtactt |
24057806 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 102 - 249
Target Start/End: Complemental strand, 23308339 - 23308191
Alignment:
Q |
102 |
aatcccttacttgaccgatgaaaacctagctaaggaacatcggactccctcagttacgtgcgggcctaccttgcggagcgtatcccgttccccttg-gag |
200 |
Q |
|
|
||||||||||||||||||||||||||||||||||| ||||||||||| |||| | ||||||| |||||||||||||||||||||||||| |||| | ||| |
|
|
T |
23308339 |
aatcccttacttgaccgatgaaaacctagctaaggtacatcggactctctcactgacgtgcgagcctaccttgcggagcgtatcccgtttccctggcgag |
23308240 |
T |
|
Q |
201 |
aacctctcgtatccccgttggcgtggataactgaaagacacgataccta |
249 |
Q |
|
|
|||||||||||||||| |||||||||||||| ||| ||||||| ||||| |
|
|
T |
23308239 |
aacctctcgtatcccccttggcgtggataacggaaggacacgacaccta |
23308191 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 101 - 207
Target Start/End: Complemental strand, 24090463 - 24090356
Alignment:
Q |
101 |
taatcccttacttgaccgatgaaaacctagctaaggaacatcggactccctcagttacgtgcgggcctaccttgcggagcgtatcccgttccccttg-ga |
199 |
Q |
|
|
||||||| ||| ||||||||||||||||||||||| |||||||||||||||||| ||||| | ||| ||||| |||| |||||||||||||| | || |
|
|
T |
24090463 |
taatcccatacatgaccgatgaaaacctagctaagatacatcggactccctcagtgacgtgtgtgccccccttgtagagcttatcccgttcccctggcga |
24090364 |
T |
|
Q |
200 |
gaacctct |
207 |
Q |
|
|
|||||||| |
|
|
T |
24090363 |
gaacctct |
24090356 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 113 - 216
Target Start/End: Complemental strand, 10215912 - 10215804
Alignment:
Q |
113 |
tgaccgatgaaaacctagctaaggaacatcggactccctcagttacgtgcgggc----ctaccttgcggagcgtatcccgttccccttg-gagaacctct |
207 |
Q |
|
|
||||||||||| ||||||||||| |||||||||||||||||| ||||| || | ||||||||||| |||||||||||||| | | |||||||| |
|
|
T |
10215912 |
tgaccgatgaattcctagctaaggtacatcggactccctcagtgtcgtgcatgcagagcccccttgcggagcttatcccgttcccctggtgtgaacctct |
10215813 |
T |
|
Q |
208 |
cgtatcccc |
216 |
Q |
|
|
|||||||| |
|
|
T |
10215812 |
tgtatcccc |
10215804 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 139; Significance: 1e-72; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 104 - 298
Target Start/End: Original strand, 39888610 - 39888803
Alignment:
Q |
104 |
tcccttacttgaccgatgaaaacctagctaaggaacatcggactccctcagttacgtgcgggcctaccttgcggagcgtatcccgttccccttggagaac |
203 |
Q |
|
|
||||||||||||||||||||||||||||||||| ||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
T |
39888610 |
tcccttacttgaccgatgaaaacctagctaaggtacaccggactccctcagtgacgtgcgggcctaccttgcggagcgtatcccgttcccctt-gagaac |
39888708 |
T |
|
Q |
204 |
ctctcgtatccccgttggcgtggataactgaaagacacgatacctaaatcttactttatggtcttgaccatatatattaacttgtcttagtactt |
298 |
Q |
|
|
||||||||||||| |||||||||||||| ||||| ||||| | ||| |||||||||||||||||||||||||||| || ||||||||||||||| |
|
|
T |
39888709 |
ctctcgtatcccccttggcgtggataacggaaagccacgacaactacatcttactttatggtcttgaccatatatgatatcttgtcttagtactt |
39888803 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 104 - 278
Target Start/End: Original strand, 3083402 - 3083576
Alignment:
Q |
104 |
tcccttacttgaccgatgaaaacctagctaaggaacatcggactccctcagttacgtgcgggcctaccttgcggagcgtatcccgttccccttggagaac |
203 |
Q |
|
|
||||||| ||||||||||||||||||||||||| ||| ||||||||||||| ||||||||||||||||| ||||| |||||||||||||||||||||| |
|
|
T |
3083402 |
tcccttaattgaccgatgaaaacctagctaaggtacactggactccctcagtgacgtgcgggcctaccttttggagcatatcccgttccccttggagaac |
3083501 |
T |
|
Q |
204 |
ctctcgtatccccgttggcgtggataactgaaagacacgatacctaaatcttactttatggtcttgaccatatat |
278 |
Q |
|
|
||||||||||||| |||| ||||||||| ||||||||||| | ||| |||||||||||||||||| ||||||||| |
|
|
T |
3083502 |
ctctcgtatcccccttggtgtggataacagaaagacacgacatctacatcttactttatggtctttaccatatat |
3083576 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 95 - 298
Target Start/End: Complemental strand, 15561919 - 15561716
Alignment:
Q |
95 |
ggaagttaatcccttacttgaccgatgaaaacctagctaaggaacatcggactccctcagttacgtgcgggcctaccttgcggagcgtatcccgttcccc |
194 |
Q |
|
|
|||| ||||| ||||||||||||| ||| ||||||||||||| |||||||||||||||| | ||||||||||| |||||||||||||||||||||||||| |
|
|
T |
15561919 |
ggaaattaattccttacttgaccgttgagaacctagctaaggtacatcggactccctcaatgacgtgcgggccgaccttgcggagcgtatcccgttcccc |
15561820 |
T |
|
Q |
195 |
ttg-gagaacctctcgtatccccgttggcgtggataactgaaagacacgatacctaaatcttactttatggtcttgaccatatatattaacttgtcttag |
293 |
Q |
|
|
||| ||||||||||||||||||| |||||||||||||| ||||||||||| ||||| ||||| | |||| ||||||| |||| || ||| ||||||||| |
|
|
T |
15561819 |
ttgcgagaacctctcgtatcccccttggcgtggataacggaaagacacgacacctacatcttgc-ttatagtcttgatcataaatgataatttgtcttag |
15561721 |
T |
|
Q |
294 |
tactt |
298 |
Q |
|
|
||||| |
|
|
T |
15561720 |
tactt |
15561716 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 79 - 196
Target Start/End: Complemental strand, 11245611 - 11245494
Alignment:
Q |
79 |
cgagtggagtaaccccggaagtt-aatcccttacttgaccgatgaaaacctagctaaggaacatcggactcc-ctcagttacgtgcgggcctaccttgcg |
176 |
Q |
|
|
||||||||||||||||| ||| |||||||||||| ||||||||| ||||||||||| |||||||||||| || | | ||| |||||| |||||||| |
|
|
T |
11245611 |
cgagtggagtaaccccg--agtacaatcccttactttaccgatgaattcctagctaaggtacatcggactcctcttaatgccgtacgggccgaccttgcg |
11245514 |
T |
|
Q |
177 |
gagcgtatcccgttcccctt |
196 |
Q |
|
|
||||||||||||| |||||| |
|
|
T |
11245513 |
gagcgtatcccgtccccctt |
11245494 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 139; Significance: 1e-72; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 104 - 298
Target Start/End: Complemental strand, 16878605 - 16878411
Alignment:
Q |
104 |
tcccttacttgaccgatgaaaacctagctaaggaacatcggactccctcagttacgtgcgggcctaccttgcggagcgtatcccgttccccttggagaac |
203 |
Q |
|
|
||||||||||||||||||||||||||||||||| ||| |||||||||||||| || ||| ||||||||||| ||||||||||| ||| |||| ||||||| |
|
|
T |
16878605 |
tcccttacttgaccgatgaaaacctagctaaggtacaccggactccctcagtgacatgcaggcctaccttgtggagcgtatcctgtttccctcggagaac |
16878506 |
T |
|
Q |
204 |
ctctcgtatccccgttggcgtggataactgaaagacacgatacctaaatcttactttatggtcttgaccatatatattaacttgtcttagtactt |
298 |
Q |
|
|
||||||||||||| |||||||||||||| ||||||||||| ||||| |||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
T |
16878505 |
ctctcgtatcccccttggcgtggataacggaaagacacgacacctacatcttactttatggtcttgaccatatatgttaacttgtcttagtactt |
16878411 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 104 - 298
Target Start/End: Complemental strand, 16990738 - 16990544
Alignment:
Q |
104 |
tcccttacttgaccgatgaaaacctagctaaggaacatcggactccctcagttacgtgcgggcctaccttgcggagcgtatcccgttccccttggagaac |
203 |
Q |
|
|
||||||||||||||||||||||||||||||||| ||| |||||||||||||| || ||| ||||||||||| ||||||||||| ||| |||| ||||||| |
|
|
T |
16990738 |
tcccttacttgaccgatgaaaacctagctaaggtacaccggactccctcagtgacatgcaggcctaccttgtggagcgtatcctgtttccctcggagaac |
16990639 |
T |
|
Q |
204 |
ctctcgtatccccgttggcgtggataactgaaagacacgatacctaaatcttactttatggtcttgaccatatatattaacttgtcttagtactt |
298 |
Q |
|
|
||||||||||||| |||||||||||||| ||||||||||| ||||| |||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
T |
16990638 |
ctctcgtatcccccttggcgtggataacggaaagacacgacacctacatcttactttatggtcttgaccatatatgttaacttgtcttagtactt |
16990544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 104 - 255
Target Start/End: Original strand, 22827516 - 22827668
Alignment:
Q |
104 |
tcccttacttgaccgatgaaaacctagctaaggaacatcggactccctcagttacgtgcgggcctaccttgcggagcgtatcccgttcccct-tggagaa |
202 |
Q |
|
|
|||||||||||||||||||||||||| |||||| |||||||||||||||| | ||||||||||||||||||||||||||||| ||||||||| ||||| |
|
|
T |
22827516 |
tcccttacttgaccgatgaaaacctaactaaggtacatcggactccctcattgacgtgcgggcctaccttgcggagcgtatctcgttcccctgacgagaa |
22827615 |
T |
|
Q |
203 |
cctctcgtatccccgttggcgtggataactgaaagacacgatacctaaatctt |
255 |
Q |
|
|
|||||||||||||| ||||||||||||| ||||||||||| ||||| ||||| |
|
|
T |
22827616 |
cctctcgtatcccccttggcgtggataatggaaagacacgacacctacatctt |
22827668 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 102 - 195
Target Start/End: Complemental strand, 29791137 - 29791043
Alignment:
Q |
102 |
aatcccttacttgaccgatgaaaacctagctaaggaacatcggactcc-ctcagttacgtgcgggcctaccttgcggagcgtatcccgttcccct |
195 |
Q |
|
|
|||||||||||| ||||||||| ||||||||||| ||||| |||||| |||| | |||||||| |||||||| |||||||||||||| ||||| |
|
|
T |
29791137 |
aatcccttactttaccgatgaattcctagctaaggtacatcagactcctctcaatgtcgtgcgggtctaccttgtggagcgtatcccgtccccct |
29791043 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 102 - 195
Target Start/End: Complemental strand, 6782 - 6689
Alignment:
Q |
102 |
aatcccttacttgaccgatgaaaacctagctaaggaacatcggactccctcagttacgtgcgggcctaccttgcggagcgtatcccgttcccct |
195 |
Q |
|
|
|||||| ||| ||||| ||||| ||||||||||| ||||| |||||||||||| |||||||||| ||||||| ||| |||||||||||||| |
|
|
T |
6782 |
aatcccatacatgacctatgaattcctagctaaggcacatcagactccctcagtgtcgtgcgggccccccttgcgaagcttatcccgttcccct |
6689 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 102 - 195
Target Start/End: Complemental strand, 21338681 - 21338587
Alignment:
Q |
102 |
aatcccttacttgaccgatgaaaacctagctaaggaacatcggactccctcagttacgtgcggg-cctaccttgcggagcgtatcccgttcccct |
195 |
Q |
|
|
|||||| ||| ||||||||||| ||||||||||| |||| | ||||||||||| |||||||| || ||||||||||| |||||||||||||| |
|
|
T |
21338681 |
aatcccatacatgaccgatgaattcctagctaaggcacattgaactccctcagtgtcgtgcgggcccccccttgcggagcttatcccgttcccct |
21338587 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 113 - 189
Target Start/End: Complemental strand, 19140 - 19064
Alignment:
Q |
113 |
tgaccgatgaaaacctagctaaggaacatcggactccctcagttacgtgcgggcctaccttgcggagcgtatcccgt |
189 |
Q |
|
|
||||||||||| ||||||||||| ||||| |||| ||||||| |||||||||| ||||||||| ||||| ||||| |
|
|
T |
19140 |
tgaccgatgaattcctagctaaggtacatcagacttcctcagtgtcgtgcgggcccaccttgcggtgcgtaacccgt |
19064 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0042 (Bit Score: 134; Significance: 1e-69; HSPs: 1)
Name: scaffold0042
Description:
Target: scaffold0042; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 102 - 298
Target Start/End: Complemental strand, 10158 - 9961
Alignment:
Q |
102 |
aatcccttacttgaccgatgaaaacctagctaaggaacatcggactccctcagttacgtgcgggcctaccttgcggagcgtatcccgttccccttg-gag |
200 |
Q |
|
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| | ||| |
|
|
T |
10158 |
aatcccttacttgaccgatgaaaacctagctaaggtacatcggactccctcagtgacgtgcgggcctaccttgcggagcgtatcccgttcccctggcgag |
10059 |
T |
|
Q |
201 |
aacctctcgtatccccgttggcgtggataactgaaagacacgatacctaaatcttactttatggtcttgaccatatatattaacttgtcttagtactt |
298 |
Q |
|
|
|||||||||||||||| ||||| ||||||| | |||||| || ||||| |||||||||||||||||||||||||||| ||| |||||||||||||| |
|
|
T |
10058 |
aacctctcgtatcccccttggcaaggataacggtaagacatgacacctacatcttactttatggtcttgaccatatatgataatttgtcttagtactt |
9961 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 121; Significance: 6e-62; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 79 - 292
Target Start/End: Original strand, 24539896 - 24540109
Alignment:
Q |
79 |
cgagtggagtaaccccggaagtt-aatcccttacttgaccgatgaaaacctagctaaggaacatcggactccctcagttacgtgcgggcctaccttgcgg |
177 |
Q |
|
|
||||||||||||||||| ||| ||||||||||||||| ||||||||||||||||||| ||| | |||||||||||| |||||||||| |||||||||| |
|
|
T |
24539896 |
cgagtggagtaaccccg--agtacaatcccttacttgacagatgaaaacctagctaaggtacaccagactccctcagtgacgtgcgggcataccttgcgg |
24539993 |
T |
|
Q |
178 |
agcgtatcccgttccccttg-gagaacctctcgtatccccgttggcgtggataactgaaagacacgatacctaaatcttactttatggtcttgaccatat |
276 |
Q |
|
|
| ||||||| |||||||| | ||||||||||||||||||| |||||||||||||| |||||||| || ||||| |||||||||||||||||||||||||| |
|
|
T |
24539994 |
accgtatccagttcccctggcgagaacctctcgtatcccccttggcgtggataacggaaagacatgacacctacatcttactttatggtcttgaccatat |
24540093 |
T |
|
Q |
277 |
atattaacttgtctta |
292 |
Q |
|
|
|| |||||||||||| |
|
|
T |
24540094 |
atgataacttgtctta |
24540109 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 82 - 195
Target Start/End: Original strand, 25239299 - 25239412
Alignment:
Q |
82 |
gtggagtaaccccggaagt-taatcccttacttgaccgatgaaaacctagctaaggaacatcggactcc-ctcagttacgtgcgggcctaccttgcggag |
179 |
Q |
|
|
|||||||||||||| ||| ||||||| ||||||||||||||| ||||||||||| ||||| |||||| |||||| ||||||||||||||||| |||| |
|
|
T |
25239299 |
gtggagtaaccccg--agtataatcccatacttgaccgatgaattcctagctaaggtacatcagactcctctcagtgtcgtgcgggcctaccttgtggag |
25239396 |
T |
|
Q |
180 |
cgtatcccgttcccct |
195 |
Q |
|
|
||| || ||||||||| |
|
|
T |
25239397 |
cgtgtctcgttcccct |
25239412 |
T |
|
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Target: chr8; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 102 - 193
Target Start/End: Complemental strand, 21539516 - 21539425
Alignment:
Q |
102 |
aatcccttacttgaccgatgaaaacctagctaaggaacatcggactccctcagttacgtgcgggcctaccttgcggagcgtatcccgttccc |
193 |
Q |
|
|
|||||| ||| |||||||||||||||||||||||| |||||||||||||||||| |||| |||| | ||||||||| |||||||||||| |
|
|
T |
21539516 |
aatcccatacatgaccgatgaaaacctagctaaggcacatcggactccctcagtgacgtatgggctccctttgcggagcttatcccgttccc |
21539425 |
T |
|
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Target: chr8; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 102 - 196
Target Start/End: Complemental strand, 25188888 - 25188793
Alignment:
Q |
102 |
aatcccttacttgaccgatgaaaacctagctaaggaacatcggactcc-ctcagttacgtgcgggcctaccttgcggagcgtatcccgttcccctt |
196 |
Q |
|
|
|||||||||||| |||||||||| ||||||||||| |||||||||||| || | | ||||||||||||||||||||| |||||| ||| |||||| |
|
|
T |
25188888 |
aatcccttactttaccgatgaaatcctagctaaggtacatcggactcctcttaatgtcgtgcgggcctaccttgcggaacgtatctcgtccccctt |
25188793 |
T |
|
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Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 123 - 187
Target Start/End: Original strand, 30613627 - 30613691
Alignment:
Q |
123 |
aaacctagctaaggaacatcggactccctcagttacgtgcgggcctaccttgcggagcgtatccc |
187 |
Q |
|
|
||||||||||| || ||||| |||||||||||| ||||||||||||||||||||||||| |||| |
|
|
T |
30613627 |
aaacctagctagggtacatcagactccctcagtgtcgtgcgggcctaccttgcggagcgtgtccc |
30613691 |
T |
|
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Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 104 - 229
Target Start/End: Complemental strand, 19440802 - 19440678
Alignment:
Q |
104 |
tcccttacttgaccgatgaaaacctagctaaggaacatcggactccctcagttacgtgcgggcctaccttgcggagcgtatcccgttccccttg-gagaa |
202 |
Q |
|
|
|||| ||| |||||||||||||||||| ||||| |||||| ||||||||| | | || ||||| ||||||||||| |||| ||||||||| | | ||| |
|
|
T |
19440802 |
tcccatacatgaccgatgaaaacctagttaaggtacatcgaactccctcaatgtcatgtgggcc-cccttgcggagcttatcgcgttcccctggcgtgaa |
19440704 |
T |
|
Q |
203 |
cctctcgtatccccgttggcgtggata |
229 |
Q |
|
|
||||| |||||||| ||||||||||| |
|
|
T |
19440703 |
cctcttgtatcccc-ctggcgtggata |
19440678 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 104 - 229
Target Start/End: Complemental strand, 19576952 - 19576828
Alignment:
Q |
104 |
tcccttacttgaccgatgaaaacctagctaaggaacatcggactccctcagttacgtgcgggcctaccttgcggagcgtatcccgttccccttg-gagaa |
202 |
Q |
|
|
|||| ||| |||||||||||||||||| ||||| |||||| ||||||||| | | || ||||| ||||||||||| |||| ||||||||| | | ||| |
|
|
T |
19576952 |
tcccatacatgaccgatgaaaacctagttaaggtacatcgaactccctcaatgtcatgtgggcc-cccttgcggagcttatcgcgttcccctggcgtgaa |
19576854 |
T |
|
Q |
203 |
cctctcgtatccccgttggcgtggata |
229 |
Q |
|
|
||||| |||||||| ||||||||||| |
|
|
T |
19576853 |
cctcttgtatcccc-ctggcgtggata |
19576828 |
T |
|
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Target: chr5 (Bit Score: 81; Significance: 4e-38; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 49 - 149
Target Start/End: Original strand, 29253251 - 29253351
Alignment:
Q |
49 |
attatctcagtttattttacggattaatcccgagtggagtaaccccggaagttaatcccttacttgaccgatgaaaacctagctaaggaacatcggactc |
148 |
Q |
|
|
||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||| |
|
|
T |
29253251 |
attatcttggttcattttacggattaatcccgagtggagtaaccccggaagttaatcccttacttgactgatgaaaacctagctaaggtacatcggactc |
29253350 |
T |
|
Q |
149 |
c |
149 |
Q |
|
|
| |
|
|
T |
29253351 |
c |
29253351 |
T |
|
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Target: chr5; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 102 - 195
Target Start/End: Original strand, 37984678 - 37984772
Alignment:
Q |
102 |
aatcccttacttgaccgatgaaaacctagctaaggaacatcggactcc-ctcagttacgtgcgggcctaccttgcggagcgtatcccgttcccct |
195 |
Q |
|
|
||||| |||||||||||||||| ||||||||||| |||||||||||| || | | |||||||||||||||||||||||||||||||| ||||| |
|
|
T |
37984678 |
aatcctttacttgaccgatgaattcctagctaaggtacatcggactcctcttaatgccgtgcgggcctaccttgcggagcgtatcccgtccccct |
37984772 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 43 - 98
Target Start/End: Complemental strand, 26075458 - 26075403
Alignment:
Q |
43 |
aacaatattatctcagtttattttacggattaatcccgagtggagtaaccccggaa |
98 |
Q |
|
|
||||||||||||| |||| |||||||||| ||| ||| |||||||||||||||||| |
|
|
T |
26075458 |
aacaatattatctgagttcattttacggaataaacccaagtggagtaaccccggaa |
26075403 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 63 - 107
Target Start/End: Original strand, 21493737 - 21493781
Alignment:
Q |
63 |
ttttacggattaatcccgagtggagtaaccccggaagttaatccc |
107 |
Q |
|
|
||||||||||||||||| |||||||||||||| ||| ||||||| |
|
|
T |
21493737 |
ttttacggattaatcccaagtggagtaaccccagaacataatccc |
21493781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 158 - 194
Target Start/End: Original strand, 22752689 - 22752725
Alignment:
Q |
158 |
cgtgcgggcctaccttgcggagcgtatcccgttcccc |
194 |
Q |
|
|
||||||||||||||||||||||||| |||||| |||| |
|
|
T |
22752689 |
cgtgcgggcctaccttgcggagcgtgtcccgtccccc |
22752725 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0005 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: scaffold0005
Description:
Target: scaffold0005; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 102 - 229
Target Start/End: Original strand, 22268 - 22396
Alignment:
Q |
102 |
aatcccttacttgaccgatgaaaacctagctaaggaacatcggactcc-ctcagttacgtgcgggcctaccttgcggagcgtatcccgttcccct-tgga |
199 |
Q |
|
|
|||||| ||| ||||||||||| ||||||||||| |||||||||||| ||| || ||||| ||||||||||| ||||||| |||||||||||| || |
|
|
T |
22268 |
aatcccatacatgaccgatgaattcctagctaaggtacatcggactcctctcggtgccgtgcaggcctaccttgtggagcgtgtcccgttcccctgaggt |
22367 |
T |
|
Q |
200 |
gaacctctcgtatccccgttggcgtggata |
229 |
Q |
|
|
|||||||| |||||||| ||||||||||| |
|
|
T |
22368 |
gaacctcttgtatcccc-ctggcgtggata |
22396 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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