View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1312_low_21 (Length: 303)
Name: NF1312_low_21
Description: NF1312
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1312_low_21 |
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Alignment Details
Target: chr1 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 30 - 292
Target Start/End: Complemental strand, 11592974 - 11592712
Alignment:
| Q |
30 |
aaatcttctttctagctaaagacagtgtagttagcttcttaaannnnnnncaataattttttctctgtgatttaatttgtatactttgtcgccgtaacaa |
129 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11592974 |
aaatcttctttctagctaaagacagtgtagttagcttcttaaatttttttcaataattttttctctgtgatttaatttgtatactttgtcgccgtaacaa |
11592875 |
T |
|
| Q |
130 |
attttatattgtcaaacaaatataaccgtgagatcattaaaaatgttcgactttaattataacaactttaaatatcgcatctatgctgatttctgattga |
229 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11592874 |
attttatattgtcaaacaaatataaccttgagatcattaaaaatgttcgactttaattataacaactttaaatatcgcatctatgctgatttctgattga |
11592775 |
T |
|
| Q |
230 |
ttgactaagaaaattctgacattgaaaatttgtcaaaatcaaactcttttctttgtggttcat |
292 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11592774 |
ttgactaagaaaattctgacattgaaaatttgtcaaaatcaaactcttttctttgtggttcat |
11592712 |
T |
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