View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1312_low_30 (Length: 251)
Name: NF1312_low_30
Description: NF1312
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1312_low_30 |
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Alignment Details
Target: chr7 (Bit Score: 228; Significance: 1e-126; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 244
Target Start/End: Complemental strand, 30166878 - 30166635
Alignment:
| Q |
1 |
ttactaaccccaaaaaataaagttcacgatcagaaatcatagcacaaaaaattagagaactcaacacaaaaatgcacaatatttgatgagtctaaatgaa |
100 |
Q |
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| T |
30166878 |
ttactaaccccaaaaaataaagttcacaatcagaaatcatagcacaaaaaattagagaactcaacacaaaaatgcacaatatttgatgagtctaaatgaa |
30166779 |
T |
|
| Q |
101 |
gctgatgtattagtaactaaacagatggaggaagcaccaacttttgctcaagaaactataaagaagaatccttagaatgatcctaaaagtgaggagtaaa |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
30166778 |
gctgatgtattagtaactaaacagatggaggaagcaccaacttttgctcaagaaactatgaagaagaatccttagaatgatcctaaaagtgaggagtaaa |
30166679 |
T |
|
| Q |
201 |
gaaaaaacggaaaaagtcctatatatacctcacacttcatctca |
244 |
Q |
| |
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||||||| |||||| ||||||||||||||||||||||||||||| |
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| T |
30166678 |
gaaaaaatggaaaaggtcctatatatacctcacacttcatctca |
30166635 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 85 - 149
Target Start/End: Original strand, 23276899 - 23276963
Alignment:
| Q |
85 |
gatgagtctaaatgaagctgatgtattagtaactaaacagatggaggaagcaccaacttttgctc |
149 |
Q |
| |
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||||||||| |||| || |||||| |||||| || ||||||||||||||||| |||||||||| |
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| T |
23276899 |
gatgagtctcaatggaggtgatgtggtagtaagtactcagatggaggaagcacccacttttgctc |
23276963 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 107; Significance: 1e-53; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 1 - 244
Target Start/End: Original strand, 43163697 - 43163938
Alignment:
| Q |
1 |
ttactaaccccaaaaaata-aagttcacgatcagaaatcatagcacaaaaaattagagaactcaacacaaaaatgcacaatatttgatgagtctaaatga |
99 |
Q |
| |
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|||||||||||||||||| |||| ||| |||||||||| |||||||| ||||||||||||| ||||||| || |||||||||||||||||||||||| |
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| T |
43163697 |
ttactaaccccaaaaaattcaagtccacaatcagaaatcctagcacaacaaattagagaacttaacacaaccatatacaatatttgatgagtctaaatga |
43163796 |
T |
|
| Q |
100 |
agctgatgtattagtaactaaacagatggaggaagcaccaacttttgctcaagaaactataaagaagaatccttagaatgatcctaaaagtgaggagtaa |
199 |
Q |
| |
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|||| | || |||||||||||||||||||||||| |||| |||||||| |||||||| | ||||||||||| ||||| || | | |||||||||| | |
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| T |
43163797 |
agctaaggtgttagtaactaaacagatggaggaaacacccgcttttgcttaagaaactgt---gaagaatcctttgaatgttctttatagtgaggagtga |
43163893 |
T |
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| Q |
200 |
agaaaaaacggaaaaagtcctatatatacctcacacttcatctca |
244 |
Q |
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|||| | | ||||||||||||||||||||||||| ||||||||| |
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| T |
43163894 |
agaagatatggaaaaagtcctatatatacctcacctttcatctca |
43163938 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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