View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1312_low_7 (Length: 453)

Name: NF1312_low_7
Description: NF1312
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1312_low_7
NF1312_low_7
[»] chr6 (8 HSPs)
chr6 (13-426)||(29420715-29421128)
chr6 (229-365)||(29462411-29462547)
chr6 (40-113)||(29462151-29462224)
chr6 (40-114)||(29405159-29405233)
chr6 (13-116)||(29608308-29608411)
chr6 (201-285)||(29608052-29608133)
chr6 (231-295)||(29404531-29404595)
chr6 (352-418)||(29607973-29608039)
[»] chr4 (7 HSPs)
chr4 (40-114)||(25048486-25048560)
chr4 (40-120)||(24999190-24999270)
chr4 (51-111)||(25181077-25181137)
chr4 (51-111)||(25251905-25251965)
chr4 (50-113)||(7727741-7727804)
chr4 (56-114)||(24987855-24987913)
chr4 (51-111)||(25169289-25169349)
[»] chr3 (2 HSPs)
chr3 (39-115)||(9212599-9212675)
chr3 (232-281)||(8088988-8089037)


Alignment Details
Target: chr6 (Bit Score: 394; Significance: 0; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 13 - 426
Target Start/End: Complemental strand, 29421128 - 29420715
Alignment:
Q  13 aatataaataatgcataaaggaaaagtacctggataattatgtgtgaaagtatcccatatacttggtccttttccaccaatatttgctgcaccttcatac 112  Q
    |||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29421128 aatacaaataatgcataaaggaaaagtacctggataattatgcgtgaaagtatcccatatacttggtccttttccaccaatatttgctgcaccttcatac 29421029  T
Q  113 taaaaattgtacattgagtcagtgatttgagtttttctagtatgataaacatcaaatatatttttcatttatcatcttacatatacaaagtagaagaaaa 212  Q
    |||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29421028 taaaaattgtacattgagtcagtgattttactttttctagtatgataaacatcaaatatatttttcatttatcatcttacatatacaaagtagaagaaaa 29420929  T
Q  213 ttaaaatatttggagtagtacctggtaagctgatgaagctgttccaaaaataaaaccttctgggaaactactacgattgagggaattgttaatatcatct 312  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  29420928 ttaaaatatttggagtagtacctggtaagctgatgaagctgttccaaaaataaaaccttctgggaaactactacgattgagggaattgttaatatcatca 29420829  T
Q  313 ttggttaacaatattgtagcttcaattatagccacacaactaagaatcacaacgattcttgggagaagaagaagatttaataccatgactatagtttata 412  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29420828 ttggttaacaatattgtagcttcaattatagccacacaactaagaatcacaacgattcttgggagaagaagaagatttaataccatgactatagtttata 29420729  T
Q  413 tatttgttcctttc 426  Q
    ||||||||||||||    
T  29420728 tatttgttcctttc 29420715  T

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Target: chr6; HSP #2
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 229 - 365
Target Start/End: Original strand, 29462411 - 29462547
Alignment:
Q  229 agtacctggtaagctgatgaagctgttccaaaaataaaaccttctgggaaactactacgattgagggaattgttaatatcatctttggttaacaatattg 328  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  29462411 agtacctggtaagctgatgatgctgttccaaaaataaaaccttctgggaaactactacgattgagggaattgttaatatcatcattggttaacaatattg 29462510  T
Q  329 tagcttcaattatagccacacaactaagaatcacaac 365  Q
    |||||||||||||||||||| |  ||||||| |||||    
T  29462511 tagcttcaattatagccacataggtaagaattacaac 29462547  T

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Target: chr6; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 40 - 113
Target Start/End: Original strand, 29462151 - 29462224
Alignment:
Q  40 acctggataattatgtgtgaaagtatcccatatacttggtccttttccaccaatatttgctgcaccttcatact 113  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||| || |||||||||||||    
T  29462151 acctggataattatgtgtgaaagtatcccatatacttggtcctcttccaccaaaattggcagcaccttcatact 29462224  T

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Target: chr6; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 40 - 114
Target Start/End: Complemental strand, 29405233 - 29405159
Alignment:
Q  40 acctggataattatgtgtgaaagtatcccatatacttggtccttttccaccaatatttgctgcaccttcatacta 114  Q
    ||||||||||||||| ||| ||| ||||||||| ||||||||| | ||||||| |||||||||||||||||||||    
T  29405233 acctggataattatgagtgtaagcatcccatatgcttggtcctctgccaccaacatttgctgcaccttcatacta 29405159  T

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Target: chr6; HSP #5
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 13 - 116
Target Start/End: Complemental strand, 29608411 - 29608308
Alignment:
Q  13 aatataaataatgcataaaggaaaagtacctggataattatgtgtgaaagtatcccatatacttggtccttttccaccaatatttgctgcaccttcatac 112  Q
    |||||||| |||  ||||| |||||  ||||||||||||||||||| || ||| |||||| ||||||||| | ||| ||| ||||||||| |||||||||    
T  29608411 aatataaacaattaataaaagaaaaagacctggataattatgtgtggaattatgccatattcttggtcctctgccaacaacatttgctgccccttcatac 29608312  T
Q  113 taaa 116  Q
    ||||    
T  29608311 taaa 29608308  T

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Target: chr6; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 201 - 285
Target Start/End: Complemental strand, 29608133 - 29608052
Alignment:
Q  201 agtagaagaaaattaaaatatttggagtagtacctggtaagctgatgaagctgttccaaaaataaaaccttctgggaaactacta 285  Q
    |||| ||||| ||||||||||||||||||   |||||||||||||||||||| ||||| |||| |||| |||| |||||||||||    
T  29608133 agtaaaagaatattaaaatatttggagta---cctggtaagctgatgaagcttttccagaaattaaacattctaggaaactacta 29608052  T

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Target: chr6; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 231 - 295
Target Start/End: Complemental strand, 29404595 - 29404531
Alignment:
Q  231 tacctggtaagctgatgaagctgttccaaaaataaaaccttctgggaaactactacgattgaggg 295  Q
    ||||||||||||||| ||||||||||||||||| ||||| ||||| |||||||| || |||||||    
T  29404595 tacctggtaagctgaagaagctgttccaaaaatgaaaccatctggaaaactactccggttgaggg 29404531  T

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Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 352 - 418
Target Start/End: Complemental strand, 29608039 - 29607973
Alignment:
Q  352 ctaagaatcacaacgattcttgggagaagaagaagatttaataccatgactatagtttatatatttg 418  Q
    |||||||||||||| | || ||  |||||||||| ||||||| ||||||||||||||  ||||||||    
T  29608039 ctaagaatcacaacaactcctgaaagaagaagaatatttaatgccatgactatagttcgtatatttg 29607973  T

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Target: chr4 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 40 - 114
Target Start/End: Original strand, 25048486 - 25048560
Alignment:
Q  40 acctggataattatgtgtgaaagtatcccatatacttggtccttttccaccaatatttgctgcaccttcatacta 114  Q
    ||||||||| ||||| | |||||||||||| |||||||||||||||||| |  | ||||||||||||||||||||    
T  25048486 acctggatatttatgagcgaaagtatcccaaatacttggtccttttccatctttttttgctgcaccttcatacta 25048560  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 40 - 120
Target Start/End: Complemental strand, 24999270 - 24999190
Alignment:
Q  40 acctggataattatgtgtgaaagtatcccatatacttggtccttttccaccaatatttgctgcaccttcatactaaaaatt 120  Q
    |||||| || ||||| || || |||||||||||||||||||||||||||||     || ||||||||||||||||||||||    
T  24999270 acctgggtatttatgagtaaaggtatcccatatacttggtccttttccaccttctcttactgcaccttcatactaaaaatt 24999190  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 51 - 111
Target Start/End: Original strand, 25181077 - 25181137
Alignment:
Q  51 tatgtgtgaaagtatcccatatacttggtccttttccaccaatatttgctgcaccttcata 111  Q
    |||| |||||||||||||||||||||| |||| |||||||   | ||||||||||||||||    
T  25181077 tatgagtgaaagtatcccatatacttgctcctcttccaccttcacttgctgcaccttcata 25181137  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 51 - 111
Target Start/End: Complemental strand, 25251965 - 25251905
Alignment:
Q  51 tatgtgtgaaagtatcccatatacttggtccttttccaccaatatttgctgcaccttcata 111  Q
    |||| |||||||||||||||||||||| |||| |||||||   | ||||||||||||||||    
T  25251965 tatgagtgaaagtatcccatatacttgctcctcttccaccttcacttgctgcaccttcata 25251905  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 50 - 113
Target Start/End: Complemental strand, 7727804 - 7727741
Alignment:
Q  50 ttatgtgtgaaagtatcccatatacttggtccttttccaccaatatttgctgcaccttcatact 113  Q
    ||||| ||||| ||||||||||||||||| ||||| |||||   || |||||||||||||||||    
T  7727804 ttatgagtgaaggtatcccatatacttggccctttgccaccttcatgtgctgcaccttcatact 7727741  T

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Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 56 - 114
Target Start/End: Original strand, 24987855 - 24987913
Alignment:
Q  56 gtgaaagtatcccatatacttggtccttttccaccaatatttgctgcaccttcatacta 114  Q
    |||||||||||||| |||||||||||||||||| |   |  ||||||||||||||||||    
T  24987855 gtgaaagtatcccaaatacttggtccttttccatcttcaaatgctgcaccttcatacta 24987913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 51 - 111
Target Start/End: Original strand, 25169289 - 25169349
Alignment:
Q  51 tatgtgtgaaagtatcccatatacttggtccttttccaccaatatttgctgcaccttcata 111  Q
    |||| ||||| |||||||| |||||||||||| |||||||   | ||||||||||||||||    
T  25169289 tatgagtgaatgtatcccaaatacttggtcctcttccaccttcacttgctgcaccttcata 25169349  T

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Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 39 - 115
Target Start/End: Complemental strand, 9212675 - 9212599
Alignment:
Q  39 tacctggataattatgtgtgaaagtatcccatatacttggtccttttccaccaatatttgctgcaccttcatactaa 115  Q
    |||||||||| ||||| ||||||||||||||||||||||||  | | |||||   |||||||||||||||| |||||    
T  9212675 tacctggatatttatgggtgaaagtatcccatatacttggtgttctaccaccttcatttgctgcaccttcaaactaa 9212599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 232 - 281
Target Start/End: Complemental strand, 8089037 - 8088988
Alignment:
Q  232 acctggtaagctgatgaagctgttccaaaaataaaaccttctgggaaact 281  Q
    |||||||||||||| || ||||||||||||| |||| |||||||||||||    
T  8089037 acctggtaagctgaagatgctgttccaaaaacaaaatcttctgggaaact 8088988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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