View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1312_low_9 (Length: 430)
Name: NF1312_low_9
Description: NF1312
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1312_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 225; Significance: 1e-124; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 39 - 283
Target Start/End: Complemental strand, 21393221 - 21392977
Alignment:
| Q |
39 |
aattcaagaaaagttgaatcgattcagtagtgatacgtttcaaaaacttttgaattgtaccatttgaagtcagaaacttctaatgatacgattcaaacac |
138 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
21393221 |
aattcaagaaaagttgaatcgattcagtagtgatatgtttcaaaaacttttgaattgtaccatttgaagtcagaaacttctgatgatacgattcaaacac |
21393122 |
T |
|
| Q |
139 |
tggtgaatcgattcatacactgaaaaatgatgaataaggctaagttccatatatgtgaacaatgcacaagacaccaatgaatcctaggtcaatgagacat |
238 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21393121 |
tggtgaatcgattcagacactgaaaaatgatgaataaggctaagttccatatgtgtgaacaatgcacaagacaccaatgaatcctaggtcaatgagacat |
21393022 |
T |
|
| Q |
239 |
agttgctaggtgatgtaacatgactatatgctagagaacaaggag |
283 |
Q |
| |
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|||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
21393021 |
agttgctaggtgatttaacatgactatatgctagagaacaaggag |
21392977 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 66 - 278
Target Start/End: Complemental strand, 16973551 - 16973340
Alignment:
| Q |
66 |
tagtgatacgtttcaaaaacttttgaattgtaccatttgaagtcagaaacttctaatgatacgattcaaacactggtgaatcgattcatacactgaaaaa |
165 |
Q |
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||||||||| ||||||| ||| ||||| | |||| ||||||||| |||||| |||||| |||||||||||| |||||| |||| | ||||| ||||| |
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| T |
16973551 |
tagtgatacaattcaaaagcttgtgaatcgattcattagaagtcagagacttctgatgatatgattcaaacactagtgaattgattaagacact-aaaaa |
16973453 |
T |
|
| Q |
166 |
tgatgaataaggctaagttccatatatgtgaacaatgcacaagacaccaatgaatcctaggtcaatgagacatagttgctaggtgatgtaacatgactat |
265 |
Q |
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| | | ||||||||| ||||||||||||||||||||| |||||||||||||||| || ||||||||||||| ||||||||| | ||| |||||||| |
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| T |
16973452 |
ggtaaattttggctaagtttcatatatgtgaacaatgcacatgacaccaatgaatcctgggacaatgagacatagatgctaggtgctttaatatgactat |
16973353 |
T |
|
| Q |
266 |
atgctagagaaca |
278 |
Q |
| |
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||||||||||||| |
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| T |
16973352 |
atgctagagaaca |
16973340 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 30 - 279
Target Start/End: Complemental strand, 25921426 - 25921179
Alignment:
| Q |
30 |
ccatgatacaattcaagaaaagttgaatcgattcagtagtgatacgtttcaaaaacttttgaattgtaccatttgaagtcagaaacttctaatgatacga |
129 |
Q |
| |
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||||||||| ||||| | ||| ||||||||||| || |||||||| ||||||||||| ||||| || |||| | ||||||| |||||| ||||||||| |
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| T |
25921426 |
ccatgatacgattcaggcaaacttgaatcgattatgttgtgatacgattcaaaaacttgtgaatcatatcattggcagtcagagacttctgatgatacga |
25921327 |
T |
|
| Q |
130 |
ttcaaacactggtgaatcgattcatacactga-aaaatgatga-ataaggctaagttccatatatgtgaacaatgcacaagacaccaatgaatcctaggt |
227 |
Q |
| |
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| ||| ||||||||||| |||| | ||| |||| ||||| || ||||||||| || |||||| ||||||||||| |||| ||||||||||||| |
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| T |
25921326 |
t-caaccactggtgaattgatttagg---tgataaaaagatgagatttggctaagtttcaaatatgtaaacaatgcacatgacattaatgaatcctagga |
25921231 |
T |
|
| Q |
228 |
caatgagacatagttgctaggtgatgtaacatgactatatgctagagaacaa |
279 |
Q |
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||||||||||||||||||||||| | |||||||||||||||||||| ||||| |
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| T |
25921230 |
caatgagacatagttgctaggtgctttaacatgactatatgctagaaaacaa |
25921179 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 344 - 401
Target Start/End: Complemental strand, 21392915 - 21392858
Alignment:
| Q |
344 |
ttatataagctttaatctccctctttttgatgatctcaaaacaagttgatgatgtgat |
401 |
Q |
| |
|
|||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||| |
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|
| T |
21392915 |
ttatataagcttcaatctccctctttttgatgctctcaaaacaagttgatgatgtgat |
21392858 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 233 - 279
Target Start/End: Original strand, 24699438 - 24699484
Alignment:
| Q |
233 |
agacatagttgctaggtgatgtaacatgactatatgctagagaacaa |
279 |
Q |
| |
|
|||||||||||||||||||| |||||||||| ||||||| ||||||| |
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| T |
24699438 |
agacatagttgctaggtgatttaacatgactttatgctatagaacaa |
24699484 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 88; Significance: 4e-42; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 58 - 279
Target Start/End: Complemental strand, 26022875 - 26022655
Alignment:
| Q |
58 |
cgattcagtagtgatacgtttcaaaaacttttgaattgtaccatttgaagtcagaaacttctaatgatacgattcaaacactggtgaatcgattcataca |
157 |
Q |
| |
|
||||||||| |||||||| ||||||||||| ||||| ||| |||| ||||||||| |||||| || ||||||||||||||||||||||||||||| || |
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| T |
26022875 |
cgattcagttgtgatacgattcaaaaacttgtgaatcgtatcattggaagtcagagacttctgattatacgattcaaacactggtgaatcgattcggtca |
26022776 |
T |
|
| Q |
158 |
ctgaaaaatgatga-ataaggctaagttccatatatgtgaacaatgcacaagacaccaatgaatcctaggtcaatgagacatagttgctaggtgatgtaa |
256 |
Q |
| |
|
| |||| ||||| ||| ||||||||| || |||||| ||| || |||| ||||| ||||||| ||||| ||| || |||||||||||||||| | ||| |
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| T |
26022775 |
at--aaaaagatgagatatggctaagtttcaaatatgtaaaccattcacatgacactaatgaattctaggacaacgatacatagttgctaggtgctttaa |
26022678 |
T |
|
| Q |
257 |
catgactatatgctagagaacaa |
279 |
Q |
| |
|
||||||||||||||||| ||||| |
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| T |
26022677 |
catgactatatgctagaaaacaa |
26022655 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 68; Significance: 3e-30; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 122 - 273
Target Start/End: Original strand, 24511845 - 24511995
Alignment:
| Q |
122 |
tgatacgattcaaacactggtgaatcgattcatacactgaaaaatgatgaataaggctaagttccatatatgtgaacaatgcacaagacaccaatgaatc |
221 |
Q |
| |
|
|||||||||||||| ||| || ||| |||||| ||||||||||| |||||||| ||||||||| ||||||||| | |||||||| |||||||||||||| |
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| T |
24511845 |
tgatacgattcaaaaactagtaaattgattcagacactgaaaaa-gatgaatatggctaagtttcatatatgtaagaaatgcacaggacaccaatgaatc |
24511943 |
T |
|
| Q |
222 |
ctaggtcaatgagacatagttgctaggtgatgtaacatgactatatgctaga |
273 |
Q |
| |
|
|| | ||||| ||||||||| |||||| | |||||||||||||||||||| |
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|
| T |
24511944 |
atatgaaaatgatacatagttgttaggtgctttaacatgactatatgctaga |
24511995 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 68 - 265
Target Start/End: Original strand, 25917749 - 25917945
Alignment:
| Q |
68 |
gtgatacgtttcaaaaacttttgaattgtaccatttgaagtcagaaacttctaatgatacgattcaaacactggtgaatcgattcatacactgaaaaatg |
167 |
Q |
| |
|
|||||||| ||||||||||| ||||| || |||| |||||||||| ||||| ||||||||||||| | ||| |||||||||||| | | |||| | |
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|
| T |
25917749 |
gtgatacgattcaaaaacttgtgaatcgtttcattagaagtcagaaccttcttatgatacgattcacatacttatgaatcgattcagtga--gtaaaaag |
25917846 |
T |
|
| Q |
168 |
atga-ataaggctaagttccatatatgtgaacaatgcacaagacaccaatgaatcctaggtcaatgagacatagttgctaggtgatgtaacatgactat |
265 |
Q |
| |
|
|||| ||| || |||||| || |||||| ||||||||||| ||||| ||| |||||||| ||||||||||||||| | |||| | ||||| |||||| |
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|
| T |
25917847 |
atgagatatggttaagtttcaaatatgtaaacaatgcacatgacacaaataaatcctagaataatgagacatagttgttgggtgctttaacaagactat |
25917945 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 53 - 133
Target Start/End: Complemental strand, 19221004 - 19220924
Alignment:
| Q |
53 |
tgaatcgattcagtagtgatacgtttcaaaaacttttgaattgtaccatttgaagtcagaaacttctaatgatacgattca |
133 |
Q |
| |
|
|||||||||||| ||||||||| |||||| || ||||| ||| |||| ||||||||| || ||||||||||||||||| |
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|
| T |
19221004 |
tgaatcgattcacaagtgatacgactcaaaaggttgtgaatcgtatcattggaagtcagagacctctaatgatacgattca |
19220924 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 54 - 153
Target Start/End: Complemental strand, 24660157 - 24660058
Alignment:
| Q |
54 |
gaatcgattcagtagtgatacgtttcaaaaacttttgaattgtaccatttgaagtcagaaacttctaatgatacgattcaaacactggtgaatcgattca |
153 |
Q |
| |
|
||||||||||| | ||||| ||||||||| | ||||| || |||||||||||||||||||| ||||||||||||||| || |||||||||||| |
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|
| T |
24660157 |
gaatcgattcaatggtgatgcgtttcaaattttggtgaatcgtttcatttgaagtcagaaacttcagatgatacgattcaaagtatgatgaatcgattca |
24660058 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 53 - 135
Target Start/End: Complemental strand, 25220471 - 25220389
Alignment:
| Q |
53 |
tgaatcgattcagtagtgatacgtttcaaaaacttttgaattgtaccatttgaagtcagaaacttctaatgatacgattcaaa |
135 |
Q |
| |
|
|||||| ||||| |||||| || |||||| |||||||| || |||||||||||||||||||| ||||||||||||||| |
|
|
| T |
25220471 |
tgaatcaattcaagagtgatgcgattcaaacttttttgaatcgtttcatttgaagtcagaaacttcagatgatacgattcaaa |
25220389 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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