View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1317A-Insertion-10 (Length: 657)

Name: NF1317A-Insertion-10
Description: NF1317A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1317A-Insertion-10
NF1317A-Insertion-10
[»] chr7 (3 HSPs)
chr7 (106-427)||(46648770-46649090)
chr7 (425-531)||(46651057-46651164)
chr7 (8-104)||(46648243-46648337)
[»] scaffold0024 (1 HSPs)
scaffold0024 (201-265)||(121382-121446)
[»] chr1 (4 HSPs)
chr1 (207-269)||(460885-460947)
chr1 (201-267)||(32511325-32511390)
chr1 (208-265)||(1519913-1519970)
chr1 (215-267)||(282323-282375)
[»] chr6 (1 HSPs)
chr6 (229-266)||(1898629-1898666)
[»] chr8 (1 HSPs)
chr8 (202-281)||(31562764-31562841)


Alignment Details
Target: chr7 (Bit Score: 266; Significance: 1e-148; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 106 - 427
Target Start/End: Original strand, 46648770 - 46649090
Alignment:
Q  106 gtatatagttaatgccttaatggcgtgaaattttttggtttattcagttaatacattatattgtttatgatctacaattaatggcgtgcaaatatcttgt 205  Q
    |||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||     
T  46648770 gtatatagttaatgccttaatggcgtaaatttttttggtttattcagttaatacattatattgtttatgatctacaattcatggcgtgcaaatatcttgc 46648869  T
Q  206 catattcactaaccatcaattaaacgtaattaatcatatatttgaattgtgttaaccatctaaagaaaaaatgaattgttagaatcaaagggattggtta 305  Q
    |||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  46648870 catattcattaaccatcaattaaacgtaattaaccatatatttgaattgtgttaaccatctaaagaaaaaatgaattgttagaaccaaagggattggtta 46648969  T
Q  306 tcatcgcgcccaaacgttctcgagtaatgtattcctcagaaatttacaaatttaaccggttgttctttctgatcggttatcctgacagaaatggcagttt 405  Q
    |||| |||||||||||||||| ||||||||||||||||||||||||||||||||| | ||||||||||||||| |||||||||| |||||||||||||||    
T  46648970 tcattgcgcccaaacgttctctagtaatgtattcctcagaaatttacaaatttaa-cagttgttctttctgattggttatcctgtcagaaatggcagttt 46649068  T
Q  406 ttcgcggttgaaggttcaggat 427  Q
    ||||||||||||||||||||||    
T  46649069 ttcgcggttgaaggttcaggat 46649090  T

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Target: chr7; HSP #2
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 425 - 531
Target Start/End: Original strand, 46651057 - 46651164
Alignment:
Q  425 gatttgtaaaatcttcccttcaagcttatcagcctggtcaa-cctctgcaacaaccattcatatttttctttggtcagaatgaccacttcatcgtcatta 523  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  46651057 gatttgtaaaatcttcccttcaagcttatcagcctggtcaagcctctgcaacaaccattcatatttttctttggtcataatgaccacttcatcgtcatta 46651156  T
Q  524 ggtgcaga 531  Q
    ||||||||    
T  46651157 ggtgcaga 46651164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 8 - 104
Target Start/End: Original strand, 46648243 - 46648337
Alignment:
Q  8 taatggcggataaatacttgattaattcagtccattatgttgttaatgagttattataannnnnnnaaacaagttatttttcacaaccactaaaaat 104  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||    
T  46648243 taatggcagataaatacttgattaattcagtccattatgttgttaatgagttattataa--tttttaaacaagttatttttcacaaccactaaaaat 46648337  T

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Target: scaffold0024 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 201 - 265
Target Start/End: Original strand, 121382 - 121446
Alignment:
Q  201 cttgtcatattcactaaccatcaattaaacgtaattaatcatatatttgaattgtgttaaccatc 265  Q
    ||||| |||||||  ||||||  |||||| ||||||||||||||||||||||||  |||||||||    
T  121382 cttgttatattcatcaaccatttattaaatgtaattaatcatatatttgaattgcattaaccatc 121446  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000006; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 207 - 269
Target Start/End: Original strand, 460885 - 460947
Alignment:
Q  207 atattcactaaccatcaattaaacgtaattaatcatatatttgaattgtgttaaccatctaaa 269  Q
    ||||||| ||| |||| | ||||| |||||| |||||||||| |||||| |||||||||||||    
T  460885 atattcattaatcatctactaaacataattagtcatatatttaaattgtattaaccatctaaa 460947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 201 - 267
Target Start/End: Original strand, 32511325 - 32511390
Alignment:
Q  201 cttgtcatattcactaaccatcaattaaacgtaattaatcatatatttgaattgtgttaaccatcta 267  Q
    ||||| ||||||| || |||||| | |||| ||||||| ||||| ||||||||||||||||||||||    
T  32511325 cttgttatattcagtagccatcact-aaacataattaaccatatgtttgaattgtgttaaccatcta 32511390  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 208 - 265
Target Start/End: Original strand, 1519913 - 1519970
Alignment:
Q  208 tattcactaaccatcaattaaacgtaattaatcatatatttgaattgtgttaaccatc 265  Q
    |||||| |||||||||||| ||| | ||||| || |||||||||||||| ||||||||    
T  1519913 tattcattaaccatcaattgaacatgattaaccacatatttgaattgtgctaaccatc 1519970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 215 - 267
Target Start/End: Original strand, 282323 - 282375
Alignment:
Q  215 taaccatcaattaaacgtaattaatcatatatttgaattgtgttaaccatcta 267  Q
    |||||||| | ||||| ||| ||| ||||||||| ||||||||||||||||||    
T  282323 taaccatccactaaacataactaaccatatatttaaattgtgttaaccatcta 282375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 229 - 266
Target Start/End: Original strand, 1898629 - 1898666
Alignment:
Q  229 acgtaattaatcatatatttgaattgtgttaaccatct 266  Q
    |||||||||| || ||||||||||||||||||||||||    
T  1898629 acgtaattaagcacatatttgaattgtgttaaccatct 1898666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 202 - 281
Target Start/End: Complemental strand, 31562841 - 31562764
Alignment:
Q  202 ttgtcatattcactaaccatcaattaaacgtaattaatcatatatttgaattgtgttaaccatctaaagaaaaaatgaat 281  Q
    |||| ||||||| ||| |||| ||| ||||||||||||  ||||||| || |||||||||||| ||| ||| ||||||||    
T  31562841 ttgttatattcattaatcatccattgaacgtaattaat--tatattttaactgtgttaaccatgtaatgaagaaatgaat 31562764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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