View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1317A-Insertion-11 (Length: 766)

Name: NF1317A-Insertion-11
Description: NF1317A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1317A-Insertion-11
NF1317A-Insertion-11
[»] chr5 (4 HSPs)
chr5 (578-766)||(33833360-33833547)
chr5 (380-455)||(29632617-29632693)
chr5 (398-456)||(21012051-21012110)
chr5 (379-456)||(21654546-21654624)
[»] scaffold0246 (2 HSPs)
scaffold0246 (241-451)||(11383-11595)
scaffold0246 (51-155)||(11701-11805)
[»] chr8 (1 HSPs)
chr8 (380-453)||(5242692-5242766)
[»] chr4 (5 HSPs)
chr4 (380-455)||(42998661-42998737)
chr4 (380-455)||(42999254-42999330)
chr4 (403-455)||(50233036-50233089)
chr4 (407-447)||(43605642-43605682)
chr4 (34-94)||(51254425-51254485)
[»] scaffold0421 (1 HSPs)
scaffold0421 (380-455)||(4569-4645)
[»] chr2 (4 HSPs)
chr2 (397-456)||(13067196-13067256)
chr2 (380-454)||(15930926-15931001)
chr2 (398-455)||(40915515-40915573)
chr2 (412-455)||(4814603-4814645)
[»] chr3 (8 HSPs)
chr3 (398-456)||(32793269-32793328)
chr3 (407-455)||(50833760-50833808)
chr3 (407-455)||(50833825-50833873)
chr3 (407-455)||(50841980-50842028)
chr3 (407-455)||(50842045-50842093)
chr3 (398-456)||(50833642-50833701)
chr3 (398-456)||(50842152-50842211)
chr3 (382-452)||(48761952-48762023)
[»] chr1 (4 HSPs)
chr1 (398-455)||(24535442-24535500)
chr1 (397-453)||(48538558-48538615)
chr1 (247-333)||(22370420-22370506)
chr1 (397-454)||(39179965-39180023)
[»] chr7 (3 HSPs)
chr7 (398-455)||(18418435-18418493)
chr7 (382-455)||(18478630-18478704)
chr7 (403-455)||(23485480-23485532)
[»] chr6 (2 HSPs)
chr6 (382-452)||(5169674-5169745)
chr6 (412-455)||(7015465-7015508)
[»] scaffold1598 (1 HSPs)
scaffold1598 (382-452)||(892-963)


Alignment Details
Target: chr5 (Bit Score: 161; Significance: 2e-85; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 161; E-Value: 2e-85
Query Start/End: Original strand, 578 - 766
Target Start/End: Original strand, 33833360 - 33833547
Alignment:
Q  578 ttaagtttagcgttggtgtagccgaatctaaaggatttagttgtttattctaattttgaactttagagtcggttcttccgattctaagtgattcaattga 677  Q
    |||| |||||||| ||||||||||||||||||||||||||||| |||||||||||||||  |||||||||||||| ||||||||||||||||||||||||    
T  33833360 ttaaatttagcgtcggtgtagccgaatctaaaggatttagttggttattctaattttgat-tttagagtcggttcatccgattctaagtgattcaattga 33833458  T
Q  678 gtttttcgaatgagattagagttggactttaactcggccgggccgtcactaaattagcctcggacgctacctggtagctttaactattt 766  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33833459 gtttttcgaatgagattagagttggactttaactcggccgggccgtcactaaattagcctcggacgctacctggtagctttaactattt 33833547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 380 - 455
Target Start/End: Original strand, 29632617 - 29632693
Alignment:
Q  380 aattaatgcattagaaatagagggaaattttt-gggttaagtgtttgcaaacctaataacattaaggagtaagggat 455  Q
    |||||||||||||||  ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  29632617 aattaatgcattagatttagagggaaatttttagggttaagtgtttgcaaacctaataacattaaggagtaagggat 29632693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 398 - 456
Target Start/End: Original strand, 21012051 - 21012110
Alignment:
Q  398 agagggaaattttt-gggttaagtgtttgcaaacctaataacattaaggagtaagggatt 456  Q
    |||||||||||||| |||||||||| |||| |||||||||||||||||||||||||||||    
T  21012051 agagggaaatttttagggttaagtgattgctaacctaataacattaaggagtaagggatt 21012110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 379 - 456
Target Start/End: Complemental strand, 21654624 - 21654546
Alignment:
Q  379 taattaatgcattagaaatagagggaaattttt-gggttaagtgtttgcaaacctaataacattaaggagtaagggatt 456  Q
    |||||||||||| |||  ||||||||||  | | ||||| |||||||||| ||||||||||||||||||||||||||||    
T  21654624 taattaatgcatcagatttagagggaaaaatgtagggtttagtgtttgcacacctaataacattaaggagtaagggatt 21654546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0246 (Bit Score: 133; Significance: 9e-69; HSPs: 2)
Name: scaffold0246
Description:

Target: scaffold0246; HSP #1
Raw Score: 133; E-Value: 9e-69
Query Start/End: Original strand, 241 - 451
Target Start/End: Complemental strand, 11595 - 11383
Alignment:
Q  241 atggaaatttgaaaataactctgcatagaaaccataaagccacaatgatccagttaataatacaaactgcactgagttccaccaaaattcaaatttcaaa 340  Q
    |||||||||||||||||||| |||||| |||||||||||||||||| | ||| |||| |||||||||| |||| ||||||||| |||||||||||| |||    
T  11595 atggaaatttgaaaataactttgcatacaaaccataaagccacaattacccaattaacaatacaaactccactaagttccaccgaaattcaaattttaaa 11496  T
Q  341 taggatggga-gggaaaaaattagggttgctctcattagtaattaatgcattagaaatagagggaaattttt-gggttaagtgtttgcaaacctaataac 438  Q
    ||||||| || |||||||| ||||| ||||||||||||||||||||| ||||||||||||||||||||||||  ||||||||||||| ||||||||||||    
T  11495 taggatgagatgggaaaaatttaggattgctctcattagtaattaatacattagaaatagagggaaatttttaaggttaagtgtttgaaaacctaataac 11396  T
Q  439 attaaggagtaag 451  Q
    |||||||||||||    
T  11395 attaaggagtaag 11383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0246; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 51 - 155
Target Start/End: Complemental strand, 11805 - 11701
Alignment:
Q  51 ttgatggctctgtagatgatggcgtggaggatgagagaggttgtggtgtgagaaaatttgaagaacagaaaggctgtgtttaataacgaagagaaagttg 150  Q
    ||||||||||||| | |||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||| ||| |||||||   |||||||||||    
T  11805 ttgatggctctgttggtgatggcgtggaggatgagagaggttatggtgtgaggaaatttgaagaacagaaaggccgtgcttaataaaagagagaaagttg 11706  T
Q  151 aattg 155  Q
    |||||    
T  11705 aattg 11701  T

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Target: chr8 (Bit Score: 55; Significance: 3e-22; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 380 - 453
Target Start/End: Original strand, 5242692 - 5242766
Alignment:
Q  380 aattaatgcattagaaatagagggaaattttt-gggttaagtgtttgcaaacctaataacattaaggagtaaggg 453  Q
    |||||||||| ||||  ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  5242692 aattaatgcaatagatttagagggaaatttttagggttaagtgtttgcaaacctaataacattaaggagtaaggg 5242766  T

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Target: chr4 (Bit Score: 53; Significance: 5e-21; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 380 - 455
Target Start/End: Original strand, 42998661 - 42998737
Alignment:
Q  380 aattaatgcattagaaatagagggaaattttt-gggttaagtgtttgcaaacctaataacattaaggagtaagggat 455  Q
    ||||||||||| |||  ||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||    
T  42998661 aattaatgcataagatttagagggaaatttttagggttaagtgtttgcagacctaataacattaaggagtaagggat 42998737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 380 - 455
Target Start/End: Original strand, 42999254 - 42999330
Alignment:
Q  380 aattaatgcattagaaatagagggaaattttt-gggttaagtgtttgcaaacctaataacattaaggagtaagggat 455  Q
    ||||||||||| |||  ||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||    
T  42999254 aattaatgcataagatttagagggaaatttttagggttaagtgtttgcagacctaataacattaaggagtaagggat 42999330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 403 - 455
Target Start/End: Original strand, 50233036 - 50233089
Alignment:
Q  403 gaaattttt-gggttaagtgtttgcaaacctaataacattaaggagtaagggat 455  Q
    ||||||||| |||||||||| |||| ||||||||||||||||||||||||||||    
T  50233036 gaaatttttagggttaagtgattgctaacctaataacattaaggagtaagggat 50233089  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 407 - 447
Target Start/End: Original strand, 43605642 - 43605682
Alignment:
Q  407 tttttgggttaagtgtttgcaaacctaataacattaaggag 447  Q
    |||| ||||||| ||||||||||||||||||||||||||||    
T  43605642 ttttagggttaattgtttgcaaacctaataacattaaggag 43605682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 34 - 94
Target Start/End: Complemental strand, 51254485 - 51254425
Alignment:
Q  34 ttgtgcagaacaaacggttgatggctctgtagatgatggcgtggaggatgagagaggttgt 94  Q
    ||||||||||   ||||||||||||||||||| |||| | |||||||| ||||||||||||    
T  51254485 ttgtgcagaaacgacggttgatggctctgtaggtgatagtgtggaggaagagagaggttgt 51254425  T

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Target: scaffold0421 (Bit Score: 45; Significance: 3e-16; HSPs: 1)
Name: scaffold0421
Description:

Target: scaffold0421; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 380 - 455
Target Start/End: Complemental strand, 4645 - 4569
Alignment:
Q  380 aattaatgcattagaaatagagggaaatttttgg-gttaagtgtttgcaaacctaataacattaaggagtaagggat 455  Q
    |||||||||||| |   ||||||||||||||| | ||||||||||||||||||||||||||||||||| ||||||||    
T  4645 aattaatgcattggttttagagggaaatttttagagttaagtgtttgcaaacctaataacattaaggaataagggat 4569  T

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Target: chr2 (Bit Score: 45; Significance: 3e-16; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 397 - 456
Target Start/End: Original strand, 13067196 - 13067256
Alignment:
Q  397 tagagggaaattttt-gggttaagtgtttgcaaacctaataacattaaggagtaagggatt 456  Q
    ||||||||||||||| |||||||||| |||| |||||||||||||||||||||||||||||    
T  13067196 tagagggaaatttttagggttaagtgattgctaacctaataacattaaggagtaagggatt 13067256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 380 - 454
Target Start/End: Original strand, 15930926 - 15931001
Alignment:
Q  380 aattaatgcattagaaatagagggaaattttt-gggttaagtgtttgcaaacctaataacattaaggagtaaggga 454  Q
    |||||||||||| |   ||||||||||||||| ||||||| ||||||||||||||||||||||||||| |||||||    
T  15930926 aattaatgcattggttttagagggaaatttttagggttaaatgtttgcaaacctaataacattaaggaataaggga 15931001  T

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Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 398 - 455
Target Start/End: Original strand, 40915515 - 40915573
Alignment:
Q  398 agagggaaattttt-gggttaagtgtttgcaaacctaataacattaaggagtaagggat 455  Q
    |||||||| ||||| |||||||||| |||| ||||||| ||||||||||||||||||||    
T  40915515 agagggaattttttagggttaagtgattgctaacctaacaacattaaggagtaagggat 40915573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 412 - 455
Target Start/End: Complemental strand, 4814645 - 4814603
Alignment:
Q  412 gggttaagtgtttgcaaacctaataacattaaggagtaagggat 455  Q
    ||||||||||||||||| |||||||| |||||||||||||||||    
T  4814645 gggttaagtgtttgcaa-cctaataaaattaaggagtaagggat 4814603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 398 - 456
Target Start/End: Original strand, 32793269 - 32793328
Alignment:
Q  398 agagggaaattttt-gggttaagtgtttgcaaacctaataacattaaggagtaagggatt 456  Q
    |||||||||||||| |||||||||| |||| |||||||||||||||||||||||||||||    
T  32793269 agagggaaatttttagggttaagtgattgctaacctaataacattaaggagtaagggatt 32793328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 407 - 455
Target Start/End: Complemental strand, 50833808 - 50833760
Alignment:
Q  407 tttttgggttaagtgtttgcaaacctaataacattaaggagtaagggat 455  Q
    |||| |||||||||||||||||||||||||||||||| |||||||||||    
T  50833808 ttttagggttaagtgtttgcaaacctaataacattaaagagtaagggat 50833760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 407 - 455
Target Start/End: Complemental strand, 50833873 - 50833825
Alignment:
Q  407 tttttgggttaagtgtttgcaaacctaataacattaaggagtaagggat 455  Q
    |||| |||||||||||||||||||||||||||||||| |||||||||||    
T  50833873 ttttagggttaagtgtttgcaaacctaataacattaacgagtaagggat 50833825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 407 - 455
Target Start/End: Original strand, 50841980 - 50842028
Alignment:
Q  407 tttttgggttaagtgtttgcaaacctaataacattaaggagtaagggat 455  Q
    |||| |||||||||||||||||||||||||||||||| |||||||||||    
T  50841980 ttttagggttaagtgtttgcaaacctaataacattaacgagtaagggat 50842028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 407 - 455
Target Start/End: Original strand, 50842045 - 50842093
Alignment:
Q  407 tttttgggttaagtgtttgcaaacctaataacattaaggagtaagggat 455  Q
    |||| |||||||||||||||||||||||||||||||| |||||||||||    
T  50842045 ttttagggttaagtgtttgcaaacctaataacattaaagagtaagggat 50842093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 398 - 456
Target Start/End: Original strand, 50833642 - 50833701
Alignment:
Q  398 agagggaaattttt-gggttaagtgtttgcaaacctaataacattaaggagtaagggatt 456  Q
    |||| ||||||||| |||||||||| |||| |||||||||||||||||||||||||||||    
T  50833642 agagagaaatttttagggttaagtgattgctaacctaataacattaaggagtaagggatt 50833701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 398 - 456
Target Start/End: Complemental strand, 50842211 - 50842152
Alignment:
Q  398 agagggaaattttt-gggttaagtgtttgcaaacctaataacattaaggagtaagggatt 456  Q
    |||| ||||||||| |||||||||| |||| |||||||||||||||||||||||||||||    
T  50842211 agagagaaatttttagggttaagtgattgctaacctaataacattaaggagtaagggatt 50842152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 382 - 452
Target Start/End: Complemental strand, 48762023 - 48761952
Alignment:
Q  382 ttaatgcattagaaatagagggaaattttt-gggttaagtgtttgcaaacctaataacattaaggagtaagg 452  Q
    |||||||| ||||  |||||||||||| || ||||| |||| ||||||||||||||| ||||| ||||||||    
T  48762023 ttaatgcaatagatttagagggaaattattagggtttagtggttgcaaacctaataatattaaagagtaagg 48761952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 398 - 455
Target Start/End: Original strand, 24535442 - 24535500
Alignment:
Q  398 agagggaaatttt-tgggttaagtgtttgcaaacctaataacattaaggagtaagggat 455  Q
    ||||||||||||| ||||||||||| |||| ||||||||||||||||||||||||||||    
T  24535442 agagggaaattttttgggttaagtgattgctaacctaataacattaaggagtaagggat 24535500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 397 - 453
Target Start/End: Complemental strand, 48538615 - 48538558
Alignment:
Q  397 tagagggaaattttt-gggttaagtgtttgcaaacctaataacattaaggagtaaggg 453  Q
    ||||||||||||||| |||||||||| |||| ||||||||||||||||||||||||||    
T  48538615 tagagggaaatttttagggttaagtgattgctaacctaataacattaaggagtaaggg 48538558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 247 - 333
Target Start/End: Complemental strand, 22370506 - 22370420
Alignment:
Q  247 atttgaaaataactctgcatagaaaccataaagccacaatgatccagttaataatacaaactgcactgagttccaccaaaattcaaa 333  Q
    |||||||||||||| |||||||||||| ||||||  ||||||  || |||| |||||||||  |||| ||||||||| |||||||||    
T  22370506 atttgaaaataactatgcatagaaaccctaaagctgcaatgacacaattaacaatacaaacctcactaagttccaccgaaattcaaa 22370420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 397 - 454
Target Start/End: Complemental strand, 39180023 - 39179965
Alignment:
Q  397 tagagggaaattttt-gggttaagtgtttgcaaacctaataacattaaggagtaaggga 454  Q
    |||||||||||| || ||||| |||| ||||||||||||||||||||||||||||||||    
T  39180023 tagagggaaattattagggtttagtggttgcaaacctaataacattaaggagtaaggga 39179965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.000000000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 398 - 455
Target Start/End: Original strand, 18418435 - 18418493
Alignment:
Q  398 agagggaaattttt-gggttaagtgtttgcaaacctaataacattaaggagtaagggat 455  Q
    |||||||||||||| |||||||||| |||| ||||||| ||||||||||||||||||||    
T  18418435 agagggaaatttttagggttaagtgattgctaacctaacaacattaaggagtaagggat 18418493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 382 - 455
Target Start/End: Complemental strand, 18478704 - 18478630
Alignment:
Q  382 ttaatgcattagaaatagagggaaattttt-gggttaagtgtttgcaaacctaataacattaaggagtaagggat 455  Q
    |||||||| ||||  |||||||||||| || ||||| |||  |||||||||||||||||||||||||||||||||    
T  18478704 ttaatgcaatagatttagagggaaattattagggtttagtagttgcaaacctaataacattaaggagtaagggat 18478630  T

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Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 403 - 455
Target Start/End: Complemental strand, 23485532 - 23485480
Alignment:
Q  403 gaaattttt-gggttaagtgtttgcaaacctaataacattaaggagtaagggat 455  Q
    ||||||||| ||||||||||||||||| |||||||| |||||||||||||||||    
T  23485532 gaaatttttagggttaagtgtttgcaa-cctaataaaattaaggagtaagggat 23485480  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000007; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 382 - 452
Target Start/End: Complemental strand, 5169745 - 5169674
Alignment:
Q  382 ttaatgcattagaaatagagggaaattttt-gggttaagtgtttgcaaacctaataacattaaggagtaagg 452  Q
    |||||||| ||||  |||||||||||| || ||||| |||| ||||||||||||||| ||||||||||||||    
T  5169745 ttaatgcaatagatttagagggaaattattagggtttagtggttgcaaacctaataatattaaggagtaagg 5169674  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 412 - 455
Target Start/End: Complemental strand, 7015508 - 7015465
Alignment:
Q  412 gggttaagtgtttgcaaacctaataacattaaggagtaagggat 455  Q
    ||||| |||| |||||||||||||||||||||||||||||||||    
T  7015508 gggtttagtggttgcaaacctaataacattaaggagtaagggat 7015465  T

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Target: scaffold1598 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold1598
Description:

Target: scaffold1598; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 382 - 452
Target Start/End: Complemental strand, 963 - 892
Alignment:
Q  382 ttaatgcattagaaatagagggaaattttt-gggttaagtgtttgcaaacctaataacattaaggagtaagg 452  Q
    |||||||| ||||  |||||||||||| || ||||| |||| ||||||||||||||| ||||| ||||||||    
T  963 ttaatgcaatagatttagagggaaattattagggtttagtggttgcaaacctaataatattaaagagtaagg 892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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