View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1317A-Insertion-12 (Length: 636)

Name: NF1317A-Insertion-12
Description: NF1317A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1317A-Insertion-12
NF1317A-Insertion-12
[»] chr2 (5 HSPs)
chr2 (250-636)||(34428971-34429359)
chr2 (8-117)||(34429494-34429603)
chr2 (8-96)||(34424941-34425029)
chr2 (364-484)||(43525168-43525289)
chr2 (288-329)||(12055128-12055169)
[»] chr4 (2 HSPs)
chr4 (364-484)||(2664960-2665081)
chr4 (364-484)||(14461483-14461604)
[»] chr5 (2 HSPs)
chr5 (288-484)||(14009412-14009606)
chr5 (288-484)||(23121084-23121278)
[»] chr8 (1 HSPs)
chr8 (288-484)||(12868413-12868607)
[»] chr7 (1 HSPs)
chr7 (288-484)||(41596562-41596756)
[»] chr6 (1 HSPs)
chr6 (278-484)||(15667181-15667384)
[»] chr3 (2 HSPs)
chr3 (364-484)||(22509760-22509881)
chr3 (364-484)||(39621861-39621982)
[»] scaffold0129 (1 HSPs)
scaffold0129 (369-484)||(7716-7832)


Alignment Details
Target: chr2 (Bit Score: 302; Significance: 1e-169; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 302; E-Value: 1e-169
Query Start/End: Original strand, 250 - 636
Target Start/End: Complemental strand, 34429359 - 34428971
Alignment:
Q  250 ctctacttgtttggagtgacttaaagactcaataatata--ctcataactaatacttacattaatttccttttcaatataaattttcatactatcattaa 347  Q
    |||||||||||| |||||||||||||  |||||||||||  |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  34429359 ctctacttgtttcgagtgacttaaagcatcaataatatatactcataactaatacttgcattaatttccttttcaatataaattttcatactatcattaa 34429260  T
Q  348 ttagatgctcatatctcatcctgtttctcaacctaatcttgatagtcttcatgttaaaaaagacctatcagttatggttatagaaactgaacgagtcatg 447  Q
    |||||| |||| |||||||| | ||||||||| || |||||||| |||||||||| ||||||| ||||||||| ||||||||||||||||||||||||||    
T  34429259 ttagatactcacatctcatcttatttctcaacttagtcttgataatcttcatgttgaaaaagatctatcagttgtggttatagaaactgaacgagtcatg 34429160  T
Q  448 attatatggagtagtctatcaattaagaagtaaatttcacttcttctacaagttgaggcgtagaagttatcacttcttcgtattattctaacaatttgaa 547  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||    
T  34429159 attatatggagtagtctatcaatcaagaagtaaatttcacttcttctacgagttgaggtgtagaagttatcacttcttcgtattattctaacaatttgaa 34429060  T
Q  548 aacataatttatccttaatattagtagttagcatattaatggcttaattacaaaggttgttcccactttatccttctaaattctaatag 636  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  34429059 aacataatttatccttaatattagtaattagcatattaatggcttaattacaaaggttattcccactttatccttctaaattctaatag 34428971  T

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Target: chr2; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 8 - 117
Target Start/End: Complemental strand, 34429603 - 34429494
Alignment:
Q  8 caacggtcatgaaaatgacagtctagattaaatggcaacaagaaatgaatcggaagtgttagaattggataccagttaccttcagcttctcgttggtaac 107  Q
    ||||||||||| ||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  34429603 caacggtcatggaaatgacggtctagattaaatggcaacaaaaaatgaatcggaagtgttagaattggataccagttaccttcagcttctcgttggtagc 34429504  T
Q  108 ggagccaaac 117  Q
    ||||||||||    
T  34429503 ggagccaaac 34429494  T

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Target: chr2; HSP #3
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 8 - 96
Target Start/End: Complemental strand, 34425029 - 34424941
Alignment:
Q  8 caacggtcatgaaaatgacagtctagattaaatggcaacaagaaatgaatcggaagtgttagaattggataccagttaccttcagcttc 96  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||    
T  34425029 caacggtcatggaaatgacagtctagattaaatggcaacaagaaatgaatcggaagtgatagaattggataccaattaccttcagcttc 34424941  T

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Target: chr2; HSP #4
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 364 - 484
Target Start/End: Complemental strand, 43525289 - 43525168
Alignment:
Q  364 catcctgtttctcaacctaatcttgatagtcttcat-gttaaaaaagacctatcagttatggttatagaaactgaacgagtcatgattatatggagtagt 462  Q
    |||| |||||||||||||| |||||||| ||||||| | | ||||||| || |||||| ||| | ||||||||| | |||||||||| |   ||||||||    
T  43525289 catcttgtttctcaacctagtcttgataatcttcattgctgaaaaagatctctcagttgtggctgtagaaactggaagagtcatgataaggcggagtagt 43525190  T
Q  463 ctatcaattaagaagtaaattt 484  Q
    |||||||| |||||||||||||    
T  43525189 ctatcaatcaagaagtaaattt 43525168  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 288 - 329
Target Start/End: Original strand, 12055128 - 12055169
Alignment:
Q  288 actcataactaatacttacattaatttccttttcaatataaa 329  Q
    ||||||||||||||||| || |||||||| ||||||||||||    
T  12055128 actcataactaatacttgcactaatttccctttcaatataaa 12055169  T

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Target: chr4 (Bit Score: 50; Significance: 3e-19; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 364 - 484
Target Start/End: Original strand, 2664960 - 2665081
Alignment:
Q  364 catcctgtttctcaacctaatcttgatagtcttcat-gttaaaaaagacctatcagttatggttatagaaactgaacgagtcatgattatatggagtagt 462  Q
    |||| |||||||||||||| |||||||| ||||||| ||| ||||||| || |||||| ||| | ||||||||| | || ||||||| | | ||||||||    
T  2664960 catcttgtttctcaacctattcttgataatcttcattgttgaaaaagatctctcagttgtggctgtagaaactggaagactcatgataagacggagtagt 2665059  T
Q  463 ctatcaattaagaagtaaattt 484  Q
    |||||||| |||||||||||||    
T  2665060 ctatcaatcaagaagtaaattt 2665081  T

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Target: chr4; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 364 - 484
Target Start/End: Complemental strand, 14461604 - 14461483
Alignment:
Q  364 catcctgtttctcaacctaatcttgatagtcttcat-gttaaaaaagacctatcagttatggttatagaaactgaacgagtcatgattatatggagtagt 462  Q
    |||| |||||||||||||| |||||||| ||||||| | | ||||||| || |||||| ||| | ||||||||| | |||||||||| |   ||||||||    
T  14461604 catcttgtttctcaacctagtcttgataatcttcattgctgaaaaagatctctcagttgtggctgtagaaactggaagagtcatgataaggcggagtagt 14461505  T
Q  463 ctatcaattaagaagtaaattt 484  Q
    |||||||| |||||||||||||    
T  14461504 ctatcaatcaagaagtaaattt 14461483  T

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Target: chr5 (Bit Score: 48; Significance: 4e-18; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 288 - 484
Target Start/End: Complemental strand, 14009606 - 14009412
Alignment:
Q  288 actcataactaatacttacattaatttccttttcaatataaattttcatactatcattaattagatgctcatatctcatcctgtttctcaacctaatctt 387  Q
    ||||||||||||||||| || |||||||| |||  ||||||| | ||||  |||||||   ||||  | ||  || |||| |||||||||||||| ||||    
T  14009606 actcataactaatacttgcactaatttcccttttgatataaactgtcatggtatcatt---tagaaacccacttcccatcttgtttctcaacctagtctt 14009510  T
Q  388 gatagtcttcat-gttaaaaaagacctatcagttatggttatagaaactgaacgagtcatgattatatggagtagtctatcaattaagaagtaaattt 484  Q
    |||| ||||||| | | ||||||| || |||||| ||| | ||||||||| | |||||||||| |   |||||||||||||||| |||||||||||||    
T  14009509 gataatcttcattgctgaaaaagatctctcagttgtggctgtagaaactggaagagtcatgataaggcggagtagtctatcaatcaagaagtaaattt 14009412  T

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Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 288 - 484
Target Start/End: Original strand, 23121084 - 23121278
Alignment:
Q  288 actcataactaatacttacattaatttccttttcaatataaattttcatactatcattaattagatgctcatatctcatcctgtttctcaacctaatctt 387  Q
    ||||| ||||||||||| || |||||||| |||| ||||||| | ||||  |||||||   ||||  | ||  || |||| |||||||||||||| ||||    
T  23121084 actcagaactaatacttgcactaatttccctttcgatataaactgtcatggtatcatt---tagaaacccacttcccatcttgtttctcaacctagtctt 23121180  T
Q  388 gatagtcttcat-gttaaaaaagacctatcagttatggttatagaaactgaacgagtcatgattatatggagtagtctatcaattaagaagtaaattt 484  Q
    |||| ||||| | | | ||||||| || |||||| | | | ||||||||| | |||||||||| |   |||||||||||||||| |||||||||||||    
T  23121181 gataatcttcgttgctgaaaaagatctctcagttgttgctgtagaaactggaagagtcatgataaggcggagtagtctatcaatcaagaagtaaattt 23121278  T

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Target: chr8 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 288 - 484
Target Start/End: Original strand, 12868413 - 12868607
Alignment:
Q  288 actcataactaatacttacattaatttccttttcaatataaattttcatactatcattaattagatgctcatatctcatcctgtttctcaacctaatctt 387  Q
    ||||| ||||||||||| || |||||||| |||| ||||||| | ||||  |||||||   ||||  | ||  || |||| |||||||||||||| ||||    
T  12868413 actcagaactaatacttgcactaatttccctttcgatataaactgtcatggtatcatt---tagaaacccacttcccatcttgtttctcaacctagtctt 12868509  T
Q  388 gatagtcttcat-gttaaaaaagacctatcagttatggttatagaaactgaacgagtcatgattatatggagtagtctatcaattaagaagtaaattt 484  Q
    |||| | ||||| | | ||||||| || |||||| ||| | ||||||||| | |||||||||| |   |||||||||||||||| |||||||||||||    
T  12868510 gataatattcattgctgaaaaagatctctcagttgtggctgtagaaactggaagagtcatgataaggcggagtagtctatcaatcaagaagtaaattt 12868607  T

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Target: chr7 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 288 - 484
Target Start/End: Complemental strand, 41596756 - 41596562
Alignment:
Q  288 actcataactaatacttacattaatttccttttcaatataaattttcatactatcattaattagatgctcatatctcatcctgtttctcaacctaatctt 387  Q
    ||||| ||||||||||| || |||||||| |||| ||||||| | ||||  |||||||   ||||  | ||  || |||| |||||||||||||| ||||    
T  41596756 actcagaactaatacttgcactaatttccctttcgatataaactgtcatggtatcatt---tagaaacccacttcccatcttgtttctcaacctagtctt 41596660  T
Q  388 gatagtcttcat-gttaaaaaagacctatcagttatggttatagaaactgaacgagtcatgattatatggagtagtctatcaattaagaagtaaattt 484  Q
    |||| ||||||| | | ||||||| || |||||| ||| | ||||||||| | | |||||||| |   |||||||||||||||| |||||||||||||    
T  41596659 gataatcttcattgctgaaaaagatctctcagttgtggctgtagaaactggaagggtcatgataaggcggagtagtctatcaatcaagaagtaaattt 41596562  T

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Target: chr6 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 278 - 484
Target Start/End: Original strand, 15667181 - 15667384
Alignment:
Q  278 tcaataatatactcataactaatacttacattaatttccttttcaatataaattttcatactatcattaattagatgctcatatctcatcctgtttctca 377  Q
    ||||||||| ||||| ||||||||||| || |||||||| |||| |||||||   |||| ||||||||   ||||  | ||  || |||| |||||||||    
T  15667181 tcaataata-actcagaactaatacttgcactaatttccctttcgatataaaccgtcatgctatcatt---tagaaacccacttcccatcttgtttctca 15667276  T
Q  378 acctaatcttgatagtcttcat-gttaaaaaagacctatcagttatggttatagaaactgaacgagtcatgattatatggagtagtctatcaattaagaa 476  Q
    ||||| |||||||| ||||||| | | |||| || || |||||| ||| | ||||| ||| | |||||||||| |  | ||| |||||||||||||||||    
T  15667277 acctagtcttgataatcttcattgctgaaaaggatctctcagttgtggatgtagaacctggaagagtcatgataaggtcgagaagtctatcaattaagaa 15667376  T
Q  477 gtaaattt 484  Q
    ||||||||    
T  15667377 gtaaattt 15667384  T

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Target: chr3 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 364 - 484
Target Start/End: Original strand, 22509760 - 22509881
Alignment:
Q  364 catcctgtttctcaacctaatcttgatagtcttcat-gttaaaaaagacctatcagttatggttatagaaactgaacgagtcatgattatatggagtagt 462  Q
    |||| |||||||||||||| |||||||| ||||||| | | ||||||| || |||||| ||| | |||||| || | |||||||||| |   ||||||||    
T  22509760 catcttgtttctcaacctagtcttgataatcttcattgctgaaaaagatctctcagttgtggctgtagaaattggaagagtcatgataaggcggagtagt 22509859  T
Q  463 ctatcaattaagaagtaaattt 484  Q
    |||||||| |||||||||||||    
T  22509860 ctatcaatcaagaagtaaattt 22509881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 364 - 484
Target Start/End: Complemental strand, 39621982 - 39621861
Alignment:
Q  364 catcctgtttctcaacctaatcttgatagtcttcat-gttaaaaaagacctatcagttatggttatagaaactgaacgagtcatgattatatggagtagt 462  Q
    |||| |||||||||||||| |||||||| ||||||| |   ||||||| || |||||| ||| | |||||| || | |||||||||| |    || ||||    
T  39621982 catcttgtttctcaacctagtcttgataatcttcattgccgaaaaagatctctcagttgtggctgtagaaattggaagagtcatgataaggcagaatagt 39621883  T
Q  463 ctatcaattaagaagtaaattt 484  Q
    |||||||| |||||||||||||    
T  39621882 ctatcaatcaagaagtaaattt 39621861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0129 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0129
Description:

Target: scaffold0129; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 369 - 484
Target Start/End: Original strand, 7716 - 7832
Alignment:
Q  369 tgtttctcaacctaatcttgatagtcttcat-gttaaaaaagacctatcagttatggttatagaaactgaacgagtcatgattatatggagtagtctatc 467  Q
    |||||||||||||| |||| ||| ||||||| | | ||||||| || |||||| ||  | |||||| || | |||||||||| |   |||||||||||||    
T  7716 tgtttctcaacctagtcttcataatcttcattgctgaaaaagatctctcagttgtgactgtagaaattggaagagtcatgataaggcggagtagtctatc 7815  T
Q  468 aattaagaagtaaattt 484  Q
    ||| |||||||||||||    
T  7816 aatcaagaagtaaattt 7832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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