View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1317A-Insertion-13 (Length: 474)
Name: NF1317A-Insertion-13
Description: NF1317A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1317A-Insertion-13 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 384; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 8 - 474
Target Start/End: Complemental strand, 35831867 - 35831398
Alignment:
| Q |
8 |
tcaggtcatgagaacaaaagtgaataatagtaaaagtgtgtgttaatagttacttctatttggtgacaattatttttaagttttgaaaattaaataattt |
107 |
Q |
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| T |
35831867 |
tcaggtcatgagaacaaaagtgaataatagtacaagtgtgtgttaatagttacttctatttggtgacaattatttttaagttt-gaaaattaaataattt |
35831769 |
T |
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| Q |
108 |
atgtttgaatagaatcacttaaaagcgaattgaacaatggaaacaaggtcaannnnnnnnnnnnnn----catttaaggtccaaatactaacttgaaaat |
203 |
Q |
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| T |
35831768 |
acgtttgaatagaatcacttaaaagcgaattgaacaatggaaacgaggtcaatttttttttttttttttccatttaaggtccaaatactaacttgaaaat |
35831669 |
T |
|
| Q |
204 |
taaaaataattatactcgagaatatctaaatatggtaaatcgtgttcgaaaaagcgaatccaaacatgtacaaattgaaggcataaaatttgacaagcta |
303 |
Q |
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| T |
35831668 |
taaaaataattatactcgagaatatctaaatatggtaaatcgtgttcgaaaaagcgaatccaaacatgtacaaattgaaggcataaaatttgacaagcta |
35831569 |
T |
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| Q |
304 |
agactagatagatacctagtttggttgacagggtaaatgagtatgggaccattacttgtgtccttgagaatattgccatacacttctttagcaaagacat |
403 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||| |
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| T |
35831568 |
agactagatagatacctagtttggttgacagggtaaatgagtatgggaccattacttgtgtccttgagaatattgccaaacacttctttagcaaagtcat |
35831469 |
T |
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| Q |
404 |
gaatctcactccttgggatcagaaggttcagccaaggatggtgaacttcccataagccttgtgctcttagc |
474 |
Q |
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| T |
35831468 |
gaatctcactccttgggatcagaaggttcagccaaggatggtgaacttcccataagccttgtgctcttagc |
35831398 |
T |
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