View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1317A-Insertion-14 (Length: 465)
Name: NF1317A-Insertion-14
Description: NF1317A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1317A-Insertion-14 |
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Alignment Details
Target: chr7 (Bit Score: 303; Significance: 1e-170; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 127 - 464
Target Start/End: Complemental strand, 8546576 - 8546236
Alignment:
| Q |
127 |
gtgtgttgttctttactttcattagtacaacatattatagatcaccattttagggcttgtttactttctaaaaacatat--ttggtattcattttaaatt |
224 |
Q |
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| T |
8546576 |
gtgtgttgttctttactttaattagtacaacatattatagatcaccattttagggcttgtttactttctaaaaacatatatttggtattcattttaaatt |
8546477 |
T |
|
| Q |
225 |
gctaacatgggtttgatatactcatatagttaataattgtgctagataaaagatagaaggcaaactagaaaaaatgttttttcagaaaccataacaacta |
324 |
Q |
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| T |
8546476 |
gctaacatgggtttgatatactcata--gttaataattgtgctagataaaagatagaaggcaaactagaaaaaatgttttttcagaaaccataacaacta |
8546379 |
T |
|
| Q |
325 |
tgttttaccattttcaaaacttccaaaaatgtcaaatatgttacaaaaattgtagaagaga---acaagtgaaatattgaatctatgctctcatgtgttt |
421 |
Q |
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| T |
8546378 |
tgttttaccattttcaaaacttccaaaaatgtcaaatatgttacaaaaattgtagaagagaatgacaagtgaaatattgaatctatgctctcatgtgttt |
8546279 |
T |
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| Q |
422 |
attagttgatatgaaaatgaaaataggaagtaaatgtgccctt |
464 |
Q |
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| T |
8546278 |
attagttgatatgaaaatgaaaataggaagtaaatgtgccctt |
8546236 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 8 - 92
Target Start/End: Complemental strand, 8546695 - 8546611
Alignment:
| Q |
8 |
gatgctgccaaaaatcgggcttcttctaacccaatcaacactgtatttggtaatttacttattcttttgttgcagcactgtttaa |
92 |
Q |
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| T |
8546695 |
gatgctgccaaaaatcaggcttcttctaacccaatcaacactgtatttggtaatttacttattcttttgttccagcactgtttaa |
8546611 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 8 - 92
Target Start/End: Complemental strand, 8538824 - 8538740
Alignment:
| Q |
8 |
gatgctgccaaaaatcgggcttcttctaacccaatcaacactgtatttggtaatttacttattcttttgttgcagcactgtttaa |
92 |
Q |
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|||||||||||||||| ||||| |||||||||| |||||||| |||||||||| | ||||||||||||| ||||||||||||| |
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| T |
8538824 |
gatgctgccaaaaatcaagcttcctctaacccaacaaacactgtctttggtaattcatttattcttttgttccagcactgtttaa |
8538740 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 8 - 64
Target Start/End: Complemental strand, 8602754 - 8602698
Alignment:
| Q |
8 |
gatgctgccaaaaatcgggcttcttctaacccaatcaacactgtatttggtaattta |
64 |
Q |
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|||||||||||||||| |||| ||||||||||| |||||||| | |||||||||||| |
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| T |
8602754 |
gatgctgccaaaaatcaggctgcttctaacccagtcaacactatctttggtaattta |
8602698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 8 - 60
Target Start/End: Original strand, 7876916 - 7876968
Alignment:
| Q |
8 |
gatgctgccaaaaatcgggcttcttctaacccaatcaacactgtatttggtaa |
60 |
Q |
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|||||||||||||||| |||| | ||||||||| ||||||||| |||||||| |
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| T |
7876916 |
gatgctgccaaaaatcaggctgcctctaacccatccaacactgtctttggtaa |
7876968 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 8 - 60
Target Start/End: Original strand, 8639792 - 8639844
Alignment:
| Q |
8 |
gatgctgccaaaaatcgggcttcttctaacccaatcaacactgtatttggtaa |
60 |
Q |
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|||||||| || |||| ||||||||||||||| | ||||||||| |||||||| |
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| T |
8639792 |
gatgctgctaagaatcaggcttcttctaaccctaccaacactgtctttggtaa |
8639844 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 393 - 453
Target Start/End: Complemental strand, 43537620 - 43537560
Alignment:
| Q |
393 |
aaatattgaatctatgctctcatgtgtttattagttgatatgaaaatgaaaataggaagta |
453 |
Q |
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||||||| ||||||| |||| | |||||||||||||| |||||||||||| |||||||| |
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| T |
43537620 |
aaatattaaatctatattctcctatgtttattagttgaagtgaaaatgaaaacaggaagta |
43537560 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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