View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1317A-Insertion-16 (Length: 774)
Name: NF1317A-Insertion-16
Description: NF1317A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1317A-Insertion-16 |
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Alignment Details
Target: chr2 (Bit Score: 205; Significance: 1e-111; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 205; E-Value: 1e-111
Query Start/End: Original strand, 470 - 773
Target Start/End: Complemental strand, 11175226 - 11174925
Alignment:
| Q |
470 |
tgtattctcaccttttctattgttttggtcagaagnnnnnnnnntgattgcttcaaaagctgtttaaaaatgattgtagaaatatcaattctcatagcat |
569 |
Q |
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| T |
11175226 |
tgtattctcaccttttctattgttttggtcagaa-aaaaaaaaatgattgttccaaaagttgtttaaaaatgattgtagaaatatcaattctcatagaat |
11175128 |
T |
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| Q |
570 |
aaaaatagaaaataactattccttataccaaataaatggacaacaatgaattagtcgaaatgacaagagatttaaatatcctaaacaaattacagggttc |
669 |
Q |
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| T |
11175127 |
aaaaatagaaaataactattccttatactaaataaatggacaacaatgaattagtcgaaatgacaagagatttaaatctcctaaacaaattacagggttc |
11175028 |
T |
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| Q |
670 |
gatatttcatttgcctatgaagaattataaattttggannnnnnnnccacaattaatctaattatttacataaaccttatatatactctatgtcaatgaa |
769 |
Q |
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| T |
11175027 |
gatatttcatttgcctatgaagaattataaattttggattttttccaca-aattaatctaattatttacataaaccttatatatactctatgtcaatgat |
11174929 |
T |
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| Q |
770 |
tttt |
773 |
Q |
| |
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|||| |
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| T |
11174928 |
tttt |
11174925 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 142; E-Value: 4e-74
Query Start/End: Original strand, 8 - 191
Target Start/End: Complemental strand, 11175589 - 11175411
Alignment:
| Q |
8 |
gttatgattcacattcaaaaatgtccgtggttatattcaatgatttagaattttgggtctcttagattctcttagatatttggggatcaccgtacgtgta |
107 |
Q |
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| T |
11175589 |
gttatgattcacattcaaaa-tgtctgtggttatattcaatgatttagaattttgggtctcttagattttcttagat--ttggtgatcaccgtacgtgta |
11175493 |
T |
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| Q |
108 |
tggtttaaggccggtgcctaggctatattacgtatactatttcatagacatgatatatataaattcgttaaactaataaggact |
191 |
Q |
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| T |
11175492 |
tggtttaaggccggtgcctaggctatattacgtatactatttcatagacatgata--tataaattcgttaaactaataaggact |
11175411 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 198 - 299
Target Start/End: Complemental strand, 11175373 - 11175272
Alignment:
| Q |
198 |
ctatatgtgtattattttcaatttcatgacgggaaaaagtatgccaagatctcacagtgagagtaacaagtaaaagaattgtgattattgattttagaat |
297 |
Q |
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| T |
11175373 |
ctatatgtgtattattttcaatttcatgacgggaaaaagtatgccaagatctcacagtgagagtaacaagtaaaagaattgtgattattgattttagaat |
11175274 |
T |
|
| Q |
298 |
tg |
299 |
Q |
| |
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|| |
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| T |
11175273 |
tg |
11175272 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 293 - 368
Target Start/End: Complemental strand, 11175299 - 11175224
Alignment:
| Q |
293 |
agaattgtgattattgattttagaattgatatcaacttattgtagtacaaccgtgggtaataacaatgcacaatgt |
368 |
Q |
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| T |
11175299 |
agaattgtgattattgattttagaattgatatgaagttattgtagtacaaccatgggtaataacaatgcacaatgt |
11175224 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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