View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1317A-Insertion-18 (Length: 770)
Name: NF1317A-Insertion-18
Description: NF1317A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1317A-Insertion-18 |
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| [»] chr6 (3 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 368; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 351 - 770
Target Start/End: Complemental strand, 33562558 - 33562139
Alignment:
| Q |
351 |
caactaatttcataattgttttttaagctttgtgcatgtaataataaaaaatatatattatggagaaaattatatctaggattagtgttgatgataaaac |
450 |
Q |
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| T |
33562558 |
caactaatctcataattgttttttaagctttgtgcatgtaataataaaaaaaatatattatggagaaaattatatcaaggattagtgttgatgataaaac |
33562459 |
T |
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| Q |
451 |
ataccaacgtggaatgaatgaaacaagtaaatgtcaagattatgacttaattaatgagtggtactatgatgacaaatttaacaaatgtaccaaatagttc |
550 |
Q |
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| T |
33562458 |
ataccaacatggaatgaatgaaacaagtaaatgtcaagattatgacttaattaatgagtggtactatgatgacaaatttaacaagtgtaccaaatagttc |
33562359 |
T |
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| Q |
551 |
aagtaatagagttgtaagttatggtcttcaaagaaattgttgtttttcaaattggcaatttactaaacttattataaaaaatagtaaattgcactacaac |
650 |
Q |
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| T |
33562358 |
aagtaatagagttgtaagatatggtcttcaaagaaattattgtttttcaaattgacaatttactaaacttattataaaaaatagtaaattgcactacaac |
33562259 |
T |
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| Q |
651 |
ttttagcctcacaaccaaaaatttagaagttgacaaaactcggaaaagtgttgccgaaaagaatagggaaccgttttcacccgtcttctatgtgagtgtt |
750 |
Q |
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| T |
33562258 |
ttttagcctcaccaacaaaaatttagaagttgacaaaactcagaaaagtgttgctgaaaagaatagggaatcgttttcacccgtcttctatgtgagtgtt |
33562159 |
T |
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| Q |
751 |
gcctattgtctttgtcaacg |
770 |
Q |
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| T |
33562158 |
gcctattgtctttgtcaacg |
33562139 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 265 - 333
Target Start/End: Complemental strand, 33562612 - 33562544
Alignment:
| Q |
265 |
gtcaatttgttatatatcgggtcaattttatagatatgattatttaactctatgcaactaatctcataa |
333 |
Q |
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| T |
33562612 |
gtcaatttgttatatatcgggtcaattttatagatatgattatttaactctatgcaactaatctcataa |
33562544 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 7 - 82
Target Start/End: Complemental strand, 33562694 - 33562618
Alignment:
| Q |
7 |
agtttgaacattgaccacaacatggatgacaaaggaaaatagatgtattagaa-aaaatgggggatgcaaattgcaa |
82 |
Q |
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| T |
33562694 |
agtttgaacattgaccacaacatggatgacaaaggaaaatagatgtattagaaaaaaatgggggatgcatattgcaa |
33562618 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 517 - 595
Target Start/End: Original strand, 16721137 - 16721215
Alignment:
| Q |
517 |
tgatgacaaatttaacaaatgtaccaaatagttcaagtaatagagttgtaagttatggtcttcaaagaaattgttgttt |
595 |
Q |
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| T |
16721137 |
tgatgacaaatttgacaagtgcaccaaacattccaagtaataaagtagtaagttatcgtctttatagagattgttgttt |
16721215 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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