View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1317A-Insertion-2 (Length: 416)
Name: NF1317A-Insertion-2
Description: NF1317A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1317A-Insertion-2 |
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| [»] chr8 (3 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 364; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 10 - 416
Target Start/End: Original strand, 42790104 - 42790503
Alignment:
| Q |
10 |
tcttaccctggatagtaaggggtaggaacaagcaaagcatctccggggtttgcaagaatgaaggttaaaagctcattagccgcggttgctccggcagtga |
109 |
Q |
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| T |
42790104 |
tcttaccctggatagtaaggggtgggaacaagcaaagcatctccggggtttgcaagaatgaaggttaaaagctcattagccgcagttgctccggcagtga |
42790203 |
T |
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| Q |
110 |
tgactattctttccgaatcaaatgtagctttaccacctcttatttgttccatgaaacttgccattgcagttctgaatgatttaagtccatgatagtcttg |
209 |
Q |
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| T |
42790204 |
tgactattctttccgaatcaaatgtagctttaccacctcttatttgttccatgaaacttgccattgcagttctgaatgatttaagtccatgatagtcttg |
42790303 |
T |
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| Q |
210 |
aaataatgcattttctctgaaaccattataatcttccgggtgcacttccaaatacttttctaccaaatcaaatgaaacctgcacaatacacattagtagt |
309 |
Q |
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| T |
42790304 |
aaataatgcattttctctgaaaccattgtaatcttccgggtgcacttccaaatacttttctaccaaatcaaatgaaacctgcacaatacacattagtagt |
42790403 |
T |
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| Q |
310 |
tagttctaaaaccattaataaagtacttaattaggagctaattataataagacgacttattcaagatatatattaacatacttgattttctgccaatccc |
409 |
Q |
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| T |
42790404 |
tagttctaaaaccattaataaagtac----ttaggagctaattataataa---gacttattcaagatatatattaacatacttgattttctgccaatccc |
42790496 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 10 - 416
Target Start/End: Original strand, 42799644 - 42800043
Alignment:
| Q |
10 |
tcttaccctggatagtaaggggtaggaacaagcaaagcatctccggggtttgcaagaatgaaggttaaaagctcattagccgcggttgctccggcagtga |
109 |
Q |
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| T |
42799644 |
tcttaccctggatagtaaggggtgggaacaagcaaagcatctccggggtttgcaagaatgaaggttaaaagctcattagccgcagttgctccggcagtga |
42799743 |
T |
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| Q |
110 |
tgactattctttccgaatcaaatgtagctttaccacctcttatttgttccatgaaacttgccattgcagttctgaatgatttaagtccatgatagtcttg |
209 |
Q |
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| T |
42799744 |
tgactattctttccgaatcaaatgtagctttaccacctcttatttgttccatgaaacttgccattgcagttctgaatgatttaagtccatgatagtcttg |
42799843 |
T |
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| Q |
210 |
aaataatgcattttctctgaaaccattataatcttccgggtgcacttccaaatacttttctaccaaatcaaatgaaacctgcacaatacacattagtagt |
309 |
Q |
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| T |
42799844 |
aaataatgcattttctctgaaaccattgtaatcttccgggtgcacttccaaatacttttctaccaaatcaaatgaaacctgcacaatacacattagtagt |
42799943 |
T |
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| Q |
310 |
tagttctaaaaccattaataaagtacttaattaggagctaattataataagacgacttattcaagatatatattaacatacttgattttctgccaatccc |
409 |
Q |
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| T |
42799944 |
tagttctaaaaccattaataaagtac----ttaggagctaattataataa---gacttattcaagatatatattaacatacttgattttctgccaatccc |
42800036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 53
Target Start/End: Complemental strand, 10966929 - 10966889
Alignment:
| Q |
13 |
taccctggatagtaaggggtaggaacaagcaaagcatctcc |
53 |
Q |
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| T |
10966929 |
taccctggatagtaaggggtaggaactagaaaagcatctcc |
10966889 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 99; Significance: 1e-48; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 10 - 232
Target Start/End: Original strand, 34567689 - 34567911
Alignment:
| Q |
10 |
tcttaccctggatagtaaggggtaggaacaagcaaagcatctccggggtttgcaagaatgaaggttaaaagctcattagccgcggttgctccggcagtga |
109 |
Q |
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|||||||| |||||||| || || |||||||| ||||||||||| || |||||||||||||| || || |||||||| || || || || || ||||||| |
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| T |
34567689 |
tcttacccaggatagtatggtgttggaacaagtaaagcatctcctggatttgcaagaatgaaagtcaagagctcattggcagcagtagcaccagcagtga |
34567788 |
T |
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| Q |
110 |
tgactattctttccgaatcaaatgtagctttaccacctcttatttgttccatgaaacttgccattgcagttctgaatgatttaagtccatgatagtcttg |
209 |
Q |
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||| |||||||| |||||||| | |||||| ||||| |||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
34567789 |
ggacgattctttcataatcaaattttgctttatttcctctaattttttccatgaaacttgccattgcttttctgaatgatttaagtccatgatagtcttg |
34567888 |
T |
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| Q |
210 |
aaataatgcattttctctgaaac |
232 |
Q |
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|||||||||||| ||||| |||| |
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| T |
34567889 |
aaataatgcattatctctaaaac |
34567911 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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