View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1317A-Insertion-20 (Length: 539)
Name: NF1317A-Insertion-20
Description: NF1317A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1317A-Insertion-20 |
 | |
|
| [»] chr2 (1 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 461; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 461; E-Value: 0
Query Start/End: Original strand, 7 - 539
Target Start/End: Original strand, 36165299 - 36165846
Alignment:
| Q |
7 |
aagatgatggctcaaaggaaactgaggaaaaaagtctattgcagcttgattattggtgatagacaccacttgaaacagaacagatatgctccaatgaaaa |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
36165299 |
aagatgatggctcaaaggaaactgaggaaaaaagtctattgcagcttgattattggtgatagacaccacttgaaacagaacaaatatgctccaatgaaaa |
36165398 |
T |
|
| Q |
107 |
caaagaagtgcatgtttgggttgaagttgacaaagtacatttagaacaaaactacattttcatggactttgaatttatgtttggtgcctcctatagtagt |
206 |
Q |
| |
|
||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36165399 |
caaagaagtgcatatttggtttgaagttgacaaagtacatttagaacaaaactacattttcatggactttgaatttatgtttggtgcctcctatagtagt |
36165498 |
T |
|
| Q |
207 |
acatcaggtaaaccatatttggcttcaaacatatactcgtatgaaagtaaggtctatgatactttttagttcagcttttgtcgtttctggatttaaaggg |
306 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36165499 |
acatcaggcaaaccatatttggcttcaaacatatactcgtatgaaagtaaggtctatgatactttttagttcagcttttgtcgtttctggatttaaaggg |
36165598 |
T |
|
| Q |
307 |
aagcaagtcctttgcttggataatatcaaacacggagcgatcgcttgtcgcagaagaag-aaacgacggtggagtagtcactaacctcactcaatcctgt |
405 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
36165599 |
aagcaagtcctttgcttggataatatcaaacacgaagcgatcgcttgtcgcagaagaagaaaacgacggtggaggagtcactaacctcactcaatcctgt |
36165698 |
T |
|
| Q |
406 |
gtcatatcatgtcctt--------------cctcccaaccagacaaaaggactctttgaatactcacctcctccgtaggactcccgttaacaagcatggg |
491 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36165699 |
gtcatatcatgtccttcctcccaaccagaacctcccaaccagacaaaaggactctttgaatactcacctcctccgtaggactcccgttaacaagcatggg |
36165798 |
T |
|
| Q |
492 |
cattgaaccacccaatacacacaccttcgtccatccaatccacttaga |
539 |
Q |
| |
|
|||||||||||| ||||||||||||||| ||||||||||||||||||| |
|
|
| T |
36165799 |
cattgaaccaccaaatacacacaccttcatccatccaatccacttaga |
36165846 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 402 - 430
Target Start/End: Original strand, 26037258 - 26037286
Alignment:
| Q |
402 |
ctgtgtcatatcatgtccttcctcccaac |
430 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
26037258 |
ctgtgtcatatcatgtccttcctcccaac |
26037286 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 12431 times since January 2019
Visitors: 8218