View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1317A-Insertion-21 (Length: 594)
Name: NF1317A-Insertion-21
Description: NF1317A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1317A-Insertion-21 |
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Alignment Details
Target: chr7 (Bit Score: 451; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 451; E-Value: 0
Query Start/End: Original strand, 8 - 587
Target Start/End: Complemental strand, 34089619 - 34089033
Alignment:
| Q |
8 |
ggacccatggacaggagtaattgtaaggtaggaaatgaatttagacaaaaggattgtcatataaaaaacgtgacagtggggacctagaaaacacaatggt |
107 |
Q |
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| T |
34089619 |
ggacccatggacaggagtaattgtaaggtaggaaatgaatttagacaaaaggattgtcatctaaaaatcgtgacagtggggacctagaaaacactatggt |
34089520 |
T |
|
| Q |
108 |
tcaaccttttctcatggttggaaacgacaattagagcaactacgaaggaatgnnnnnnngcatcagaaataatacgagcaaaatgagattcaactggatt |
207 |
Q |
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| T |
34089519 |
tcaaccttttctcatggttggaaacgagaattagagaaactacgaaggaatgaaaaaaagcaccagaaataatacgagcaaaatgagattcaattggatt |
34089420 |
T |
|
| Q |
208 |
agcacacggacaaacacaaacccataagtcaaaccacagggtaacaggaataggaggaatcgaccaac--gagaattgcctacaatcaattgcggccaga |
305 |
Q |
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| T |
34089419 |
agcacacggacaaacacaaacccataagtcaaaccacagcataacagcaataggaggaatcgaccaacaagagaattgcctacaatcaattgcggccaga |
34089320 |
T |
|
| Q |
306 |
tgggcaaaacatggattttaccaacaaaggacattaatgagggttgtgagagatcaagtgacctcacatcccacgggatcttgtggtggtccttgctcgt |
405 |
Q |
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||||||||||||||||||| ||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34089319 |
tgggcaaaacatggatttttccaacaaaggacattgatgagggttgtgagaggtcaagtgacctcacatcccacgggatcttgtggtggtccttgctcgt |
34089220 |
T |
|
| Q |
406 |
gtgactagtcaggtgct-----agtgagcaataatgctgctatgctactgtgaacaggtgagtgctaaagaaagctaaaaccctaaagaatgtgaaagat |
500 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||| |
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| T |
34089219 |
gtgactagtcaggtgcttcttaggtgagcaataatgctgctatgctactgtgaacaggtgagtgctaaagaaagctaaaaccctaaacaaagtgaaagat |
34089120 |
T |
|
| Q |
501 |
ggtccaaccgaaatgcctgtaccaattcgattagaccacctgaattgaatatggataatttacaatgaagtctagaatagtaccccc |
587 |
Q |
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||||||||| |||| ||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
34089119 |
ggtccaaccaaaattcctgtaccaattcaattaaaccacctgaattgaatatggataatttacaatgaagtctaaaatagtaccccc |
34089033 |
T |
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