View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1317A-Insertion-25 (Length: 150)
Name: NF1317A-Insertion-25
Description: NF1317A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1317A-Insertion-25 |
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| [»] scaffold0287 (1 HSPs) |
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Alignment Details
Target: scaffold0287 (Bit Score: 40; Significance: 0.00000000000005; HSPs: 1)
Name: scaffold0287
Description:
Target: scaffold0287; HSP #1
Raw Score: 40; E-Value: 0.00000000000005
Query Start/End: Original strand, 8 - 51
Target Start/End: Complemental strand, 12455 - 12412
Alignment:
| Q |
8 |
aactcgacataacacataagtgttttttcaaggttaaatcttac |
51 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
12455 |
aactcgacataacacataagtgttttttcaagattaaatcttac |
12412 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.00000000000005; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.00000000000005
Query Start/End: Original strand, 8 - 51
Target Start/End: Original strand, 3633630 - 3633673
Alignment:
| Q |
8 |
aactcgacataacacataagtgttttttcaaggttaaatcttac |
51 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
3633630 |
aactcgacataacacataagtgttttttcaagattaaatcttac |
3633673 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 8 - 48
Target Start/End: Original strand, 26820882 - 26820922
Alignment:
| Q |
8 |
aactcgacataacacataagtgttttttcaaggttaaatct |
48 |
Q |
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|||||| |||||||||||||||||||| || |||||||||| |
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| T |
26820882 |
aactcggcataacacataagtgtttttccatggttaaatct |
26820922 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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