View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1317A-Insertion-29 (Length: 101)
Name: NF1317A-Insertion-29
Description: NF1317A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1317A-Insertion-29 |
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| [»] chr7 (1 HSPs) |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 62; Significance: 2e-27; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 62; E-Value: 2e-27
Query Start/End: Original strand, 8 - 101
Target Start/End: Original strand, 13325287 - 13325375
Alignment:
| Q |
8 |
gaaactggcatgtgttatagcccaaaattaatgccatgcctatgaagagaaatatagactcgttgttcatatcaaatagttaatttcctatttc |
101 |
Q |
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| T |
13325287 |
gaaattggcatgtgttatagcccaaaattaatgc-----ctatgaagagaaatatagacacgttgttcgtatcaaatagttaatttcctatttc |
13325375 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 62; Significance: 2e-27; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 62; E-Value: 2e-27
Query Start/End: Original strand, 8 - 101
Target Start/End: Original strand, 5667160 - 5667248
Alignment:
| Q |
8 |
gaaactggcatgtgttatagcccaaaattaatgccatgcctatgaagagaaatatagactcgttgttcatatcaaatagttaatttcctatttc |
101 |
Q |
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| T |
5667160 |
gaaattggcatgtgttatagcccaaaattaatgc-----ctatgaagagaaatatagacacgttgttcgtatcaaatagttaatttcctatttc |
5667248 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 55; E-Value: 4e-23
Query Start/End: Original strand, 8 - 101
Target Start/End: Complemental strand, 39739829 - 39739743
Alignment:
| Q |
8 |
gaaactggcatgtgttatagcccaaaattaatgccatgcctatgaagagaaatatagactcgttgttcatatcaaatagttaatttcctatttc |
101 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||| |||||| | |||||||||||||||||||||||||||||| |
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| T |
39739829 |
gaaactggcatatgttatagcccaaaattaatgccatgcctatgaagag----atagacac---gttcatatcaaatagttaatttcctatttc |
39739743 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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