View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1317A-Insertion-3 (Length: 814)
Name: NF1317A-Insertion-3
Description: NF1317A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1317A-Insertion-3 |
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Alignment Details
Target: chr5 (Bit Score: 652; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 652; E-Value: 0
Query Start/End: Original strand, 7 - 777
Target Start/End: Complemental strand, 39544091 - 39543319
Alignment:
| Q |
7 |
agtatagattataaagtgttttaatcgtcattgttactatgcagacaacatggatgaaatgtggtggattagtagtggcttgcacttttgaccatcgtat |
106 |
Q |
| |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39544091 |
agtatagattataa-gtgttttaatcgtcattgttactatgcagacaacatggatgaaatgtggtggattagtagtggcttgcacttttgaccatcgtat |
39543993 |
T |
|
| Q |
107 |
agcggacgcatattcagcaaacatgttccttgtatcatgggccgagatagctcggcccaatgataacaagtctttgatcccaataacgcaaccttgtttt |
206 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||| || ||||||||||||| |
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| T |
39543992 |
agcggacgcatattctgcaaacatgttccttgtatcatgggccgagatagctcgacccaacaataacaagtctttgatcccaacaatgcaaccttgtttt |
39543893 |
T |
|
| Q |
207 |
agacggtcacttatgaccccacgacgcccaccttccatacatccttcactttatgacatgtatgtccccatctctgatatgcctccaccaattcaacttg |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
39543892 |
agacggtcacttatgaccccacgacgcccaccttccatacatccttcactttatgacatgtatgtccccatctctgatatgcctccaccacctcaacttg |
39543793 |
T |
|
| Q |
307 |
aatctgatcaaaaaactgacccaataataagtcgcatatactatgtaacaagcaaagaactcaacaacatgcagtcacttgccaactcaaac---aatgg |
403 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
39543792 |
aatctgatcaaaaaactgacccaataataagtcgcatatattatgtaacaagcaaagaactcaacaacatgcagtcacttgccaactcaaacaataatgg |
39543693 |
T |
|
| Q |
404 |
tggtagttccaaacgctcaaaactcgaatccttttctgccttcttgtggaaaatggttgccgcagcgacttcaatcaataatgaaaacattgttgcaaaa |
503 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||| |||| ||||||||||||||||||| |||||||||||| |
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|
| T |
39543692 |
tggtagttccaaacgctcaaaactcgagtccttttctgctttcttgtggaaaatggttgccgaagcggcttcaatcaataatgaaaatattgttgcaaaa |
39543593 |
T |
|
| Q |
504 |
atggggattgtggttgacgggagaaagagactaagcaacggagacaaacacaaagacgagattatgaattcatattttgggaatgtgctttcgattccct |
603 |
Q |
| |
|
|||||| ||||||||||||| |||||||| ||||||||||| |||||| ||||||| ||| ||||||||||||||||||||||||||||||||||||||| |
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|
| T |
39543592 |
atggggcttgtggttgacggaagaaagaggctaagcaacggtgacaaaaacaaagaagagcttatgaattcatattttgggaatgtgctttcgattccct |
39543493 |
T |
|
| Q |
604 |
atagtggtagattagcagaagagctggttgataatccgctatgttgggtggctgatcgagttcatgagtttttggaggcagcagtgacagaggagcattt |
703 |
Q |
| |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
39543492 |
atggtggtagattagcagaagagctggttgataatccgctatgttgggtggctgatcgagttcatgagtttttggaggcagcagtgacagaggagcattt |
39543393 |
T |
|
| Q |
704 |
cttgggtctaattgattgggtggaagagcatcgaccagttccgggattggcaaggatttattgtggtagcactg |
777 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| ||||||| |
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|
| T |
39543392 |
cttgggtctaattgattgggtggaagagcatcgaccagttcctggattggctaggatttattgtggcagcactg |
39543319 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 574; E-Value: 0
Query Start/End: Original strand, 21 - 777
Target Start/End: Complemental strand, 39554097 - 39553338
Alignment:
| Q |
21 |
agtgttttaatcgtcattgttactatgcagacaacatggatgaaatgtggtggattagtagtggcttgcacttttgaccatcgtatagcggacgcatatt |
120 |
Q |
| |
|
||||||||||| ||||||||||||||||| |||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| || || |||| |
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|
| T |
39554097 |
agtgttttaattatcattgttactatgcaggcaacttggatgaaatgtggtggtttagtagtggcttgcacttttgaccatcgtatagctgatgcctatt |
39553998 |
T |
|
| Q |
121 |
cagcaaacatgttccttgtatcatgggccgagatagctcggcccaatgataacaagtctttgatcccaataacgcaaccttgttttagacggtcacttat |
220 |
Q |
| |
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| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||| | |
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|
| T |
39553997 |
ctgcaaacatgttccttgtatcatgggccgagatagctcggcccaatgataacaagtctttgatcccaacaacgcaaccttgttttcgacggtcacttct |
39553898 |
T |
|
| Q |
221 |
gaccccacgacgcccaccttccatacatccttcactttatgacatgtatgtccccatctctgatatgcctccaccaattcaacttgaatctgatcaaaaa |
320 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||| | ||||||||| ||| |||||||||| ||| |
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|
| T |
39553897 |
gaccccacgacgcccaccttccatccatccttcaatttatgacatgtatgtccccatctctgatctacctccaccaccagaacctgaatctgatattaaa |
39553798 |
T |
|
| Q |
321 |
actgacccaataataagtcgcatatactatgtaacaagcaaagaactcaacaacatgcagtcacttgccaactcaaacaat---ggtggtagttccaaac |
417 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||| | |
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|
| T |
39553797 |
accgacccaataataagtcgcatatactatgtaacaagcaaagaactcaacaacatgcagtcactagccaactcaaacaataatggtggtagttccaagc |
39553698 |
T |
|
| Q |
418 |
gctcaaaactcgaatccttttctgccttcttgtggaaaatggttgccgcagcgacttcaatcaataatgaaaacattgttgcaaaaatggggattgtggt |
517 |
Q |
| |
|
||||||||||||| ||||||||||| |||||||||||||||||||||| |||| ||||||||||||||||||| |||||||||||||||||| ||||||| |
|
|
| T |
39553697 |
gctcaaaactcgagtccttttctgctttcttgtggaaaatggttgccgaagcggcttcaatcaataatgaaaatattgttgcaaaaatggggcttgtggt |
39553598 |
T |
|
| Q |
518 |
tgacgggagaaagagactaagcaacggagacaaacacaaagacgagattatgaattcatattttgggaatgtgctttcgattccctatagtggtagatta |
617 |
Q |
| |
|
|||||| |||||||| ||||||||||| |||||| ||||||| ||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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|
| T |
39553597 |
tgacggaagaaagaggctaagcaacggtgacaaaaacaaagaagagcttatgaattcatattttgggaatgtgctttcgattccctatggtggtagatta |
39553498 |
T |
|
| Q |
618 |
gcagaagagctggttgataatccgctatgttgggtggctgatcgagttcatgagtttttggaggcagcagtgacagaggagcatttcttgggtctaattg |
717 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
39553497 |
gcagaagagctggttgataatccgctatgttgggtggctgatcgagttcatgagtttttggaggcagcagtgacagaggagcatttcttgggtctaattg |
39553398 |
T |
|
| Q |
718 |
attgggtggaagagcatcgaccagttccgggattggcaaggatttattgtggtagcactg |
777 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||| |||||||||||||| ||||||| |
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|
| T |
39553397 |
attgggtggaagagcatcgaccagttcctggattggctaggatttattgtggcagcactg |
39553338 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 37 - 766
Target Start/End: Complemental strand, 39587191 - 39586456
Alignment:
| Q |
37 |
ttgttactatgcagacaacatggatgaaatgtggtggattagtagtggcttgcacttttgaccatcgtatagcggacgcatattcagcaaacatgttcct |
136 |
Q |
| |
|
|||| ||| ||||| |||| ||||||||||||||||| ||||||||||| |||| |||||||||||| ||||| ||||| ||||| ||||||||||| || |
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|
| T |
39587191 |
ttgtaactgtgcaggcaacttggatgaaatgtggtgggttagtagtggcgtgcaattttgaccatcgaatagccgacgcctattctgcaaacatgtttct |
39587092 |
T |
|
| Q |
137 |
tgtatcatgggccgagatagctcggcccaatgataacaagtctttgatcccaataacgcaaccttgttttagacggtcacttatgaccccacgacgccca |
236 |
Q |
| |
|
||||||||||||||||||||| || | | ||||||||||||||||||||| ||| |||||||||||| | |||| ||| |||||||| ||| |||| |
|
|
| T |
39587091 |
tgtatcatgggccgagatagcccgatcgagcaataacaagtctttgatcccaacaacacaaccttgttttcaaaggtcccttctgaccccaagacaccca |
39586992 |
T |
|
| Q |
237 |
ccttccatacatccttcactttatgacatgtatgtccccatctctgatatgcctccacca-----attcaa-cttgaatctgatcaaaaaactgacccaa |
330 |
Q |
| |
|
|||||||| ||||||||||| ||||||||||| |||||||||| ||| | ||||||||| || ||| | |||| ||| ||||| ||||| |
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|
| T |
39586991 |
ccttccatccatccttcactctatgacatgtacatccccatctcggatctacctccaccacctgaatccaagcccgaattagatattaaaaccaacccac |
39586892 |
T |
|
| Q |
331 |
taataagtcgcatatactatgtaacaagcaaagaactcaacaacatgcagtcacttgccaactcaaacaatggtggtagttccaaacgctcaaaactcga |
430 |
Q |
| |
|
||||||||||||| ||||| ||||||||| |||||||||||| |||||||| ||| |||||| |||| ||| |||| || || ||||||||||| || |
|
|
| T |
39586891 |
taataagtcgcatgtactacgtaacaagcgaagaactcaacaccatgcagttactagccaacacaaataatagtggaagcgttaagcgctcaaaacttga |
39586792 |
T |
|
| Q |
431 |
atccttttctgccttcttgtggaaaatggttgccgcagcgacttcaatcaataatgaaaacattgttgcaaaaatggggattgtggttgacgggagaaag |
530 |
Q |
| |
|
||| |||||||| |||||||||||||||||||| |||| |||||| ||||| |||||| ||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
39586791 |
atcgttttctgctttcttgtggaaaatggttgcatcagccgcttcaaccaatagtgaaaatgttgttgcaaaaatggggattgtggttgacggaagaaag |
39586692 |
T |
|
| Q |
531 |
agactaagcaacggagacaaacacaaagacgagattatgaattcatattttgggaatgtgctttcgattccctatagtggtagattagcagaagagctgg |
630 |
Q |
| |
|
||| |||||||||| |||||| ||||||| ||| |||||| ||| |||||||||||||||||||| | |||||||||| |||||||| |||||| || | |
|
|
| T |
39586691 |
agattaagcaacggtgacaaaaacaaagaagagtttatgagttcgtattttgggaatgtgctttcaactccctatagttgtagattaatagaagaacttg |
39586592 |
T |
|
| Q |
631 |
ttgataatccgctatgttgggtggctgatcgagttcatgagtttttggaggcagcagtgacagaggagcatttcttgggtctaattgattgggtggaaga |
730 |
Q |
| |
|
|||| || || ||||||||||| | || | ||||||||||||| |||||| || | || || || ||||||||||| |||||||||||||||||||| |
|
|
| T |
39586591 |
ttgaaaagtcgttatgttgggtgacagagcaagttcatgagtttgtggaggttgcggacacggaagaacatttcttgggactaattgattgggtggaaga |
39586492 |
T |
|
| Q |
731 |
gcatcgaccagttccgggattggcaaggatttattg |
766 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||| |
|
|
| T |
39586491 |
gcatcgaccggttccgggattggcaaggatttattg |
39586456 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 49; Significance: 1e-18; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 66 - 154
Target Start/End: Complemental strand, 17503870 - 17503782
Alignment:
| Q |
66 |
tgtggtggattagtagtggcttgcacttttgaccatcgtatagcggacgcatattcagcaaacatgttccttgtatcatgggccgagat |
154 |
Q |
| |
|
|||||||| |||||||||| ||||| ||||| ||||| ||||| || ||||||||| ||||||||||||| ||||||||||||||||| |
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|
| T |
17503870 |
tgtggtgggatagtagtggcatgcacatttgatcatcgcatagcagatgcatattcaacaaacatgttcctagtatcatgggccgagat |
17503782 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 78 - 159
Target Start/End: Complemental strand, 17475735 - 17475654
Alignment:
| Q |
78 |
gtagtggcttgcacttttgaccatcgtatagcggacgcatattcagcaaacatgttccttgtatcatgggccgagatagctc |
159 |
Q |
| |
|
|||||||| ||||| ||||| ||||| ||||| || || || ||| ||||||||||| | ||||||||||||||||| |||| |
|
|
| T |
17475735 |
gtagtggcatgcacatttgatcatcgcatagcagatgcctactcaacaaacatgttcttagtatcatgggccgagatggctc |
17475654 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 693 - 775
Target Start/End: Complemental strand, 17503234 - 17503152
Alignment:
| Q |
693 |
gaggagcatttcttgggtctaattgattgggtggaagagcatcgaccagttccgggattggcaaggatttattgtggtagcac |
775 |
Q |
| |
|
||||| |||||| | || || |||||||||||||||| |||||||| ||||| |||||||| | ||||||| ||||| |||| |
|
|
| T |
17503234 |
gaggaacatttcctagggctcattgattgggtggaagcacatcgacctgttcctggattggcgaagatttatagtggtggcac |
17503152 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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