View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1317A-Insertion-4 (Length: 710)
Name: NF1317A-Insertion-4
Description: NF1317A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1317A-Insertion-4 |
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| [»] chr1 (2 HSPs) |
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| [»] scaffold1297 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 657; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 657; E-Value: 0
Query Start/End: Original strand, 7 - 710
Target Start/End: Complemental strand, 8317249 - 8316543
Alignment:
| Q |
7 |
atgtaggtcatgggatgccgcataataaaattcaatgtcttgttctatggaaacaatttcaagtagaggagcttctaaaataagatcttttccacccgac |
106 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
8317249 |
atgtaggtcatgggatgccgcattataaaattcaatgtcttgttctatggaaacaatttcaagtagaggagcttctacaataagatcttttccacccgac |
8317150 |
T |
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| Q |
107 |
caattgcagtttttgatatcaaactttctaagaagtggtaaattaagggtcmaacagtcgctagaggtatcaatcttaaaaaagatcccatacaacttga |
206 |
Q |
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| T |
8317149 |
caattgcagtttttgatatcaaactttctaagaagtggtaaattaagggtcaaacagtcgctagaggtatcaatcttaaaaaagatcccatacaacttga |
8317050 |
T |
|
| Q |
207 |
ggagttttaggtgtccaaaatgaacagaaatgctgggaaattttatggtggagaacacatggagtaccaattctaattcttctaaggaggtgcagttgaa |
306 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8317049 |
ggagttttaggtgtccaaaatgaacagaaatgctgggaaattttatggtggaggacacatggagtaccaattctaattcttctaaggaggtgcagttgaa |
8316950 |
T |
|
| Q |
307 |
aagataatgagatgtaagagcagaaaagaggagctgataaaaagatgaatggatccgaagaatttttactctccgattcaagatgctagagatccaagta |
406 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8316949 |
aagataatgagatgtaagagcagaaaaggggagctgataaaaagatgaatggatccgaagaatttttactctccgattcaagatgctagagatccaagta |
8316850 |
T |
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| Q |
407 |
ttttgaagggatatatcacgcttgttattgatcagtaaagaaaatctttccaactccatgcttgagattgaagtaaggagaagtgctctgccaacaaaat |
506 |
Q |
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| T |
8316849 |
ttttgaagggatatatcacgcttgttattgatcagtaaagaaaatctttccaactccatgcttgagattgaagtaaggagaagtgctctgccaacaaaat |
8316750 |
T |
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| Q |
507 |
ttacaaactgctgctcctttttacctgattctattttcatcccgctctcaaaatctatctccacacgcctttcatatacttctgcatcgcgcaaattggc |
606 |
Q |
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| T |
8316749 |
ttacaaactgctgctcctttttacctgattctattttcatcccgctctcaaaatctatctccacacgcctttcatatacttctgcatcgcgcaaattggc |
8316650 |
T |
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| Q |
607 |
tttatgattgccgcaaacatgacaccttggacatacagtcaatttatactgcatcc-aaatcatcagagttacttaatttatcctc-atg-tttggggtg |
703 |
Q |
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| T |
8316649 |
tttatgatttccgcaaacatgacaccttggacatacagtcaatttatactgcatccaaaatcatcagagttacttaatttatcatcaatgttttggggtg |
8316550 |
T |
|
| Q |
704 |
gactatc |
710 |
Q |
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||||||| |
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| T |
8316549 |
gactatc |
8316543 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 43 - 128
Target Start/End: Original strand, 8358987 - 8359072
Alignment:
| Q |
43 |
gtcttgttctatggaaacaatttcaagtagaggagcttctaaaataagatcttttccacccgaccaattgcagtttttgatatcaa |
128 |
Q |
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| T |
8358987 |
gtcttgttctatggaaatgttttcaagaagaggagcttgtacgataagatcttttctaccacaccaaatgcagtttttaatatcaa |
8359072 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1297 (Bit Score: 61; Significance: 7e-26; HSPs: 1)
Name: scaffold1297
Description:
Target: scaffold1297; HSP #1
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 42 - 419
Target Start/End: Original strand, 1745 - 2125
Alignment:
| Q |
42 |
tgtcttgttctatggaaacaatttcaagtagaggagcttctaaaataagatcttttccacccgaccaattgcagtttttgatatcaaactttctaagaag |
141 |
Q |
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|||||||| ||||||||||| |||||||||| | |||| || ||||| || ||||||| |||| ||| |||||| |||| ||||||||| | | ||| |
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| T |
1745 |
tgtcttgtcctatggaaacagtttcaagtagggaggcttgtacaataacatattttccattcgactaatggcagttactgatctcaaacttttttacaag |
1844 |
T |
|
| Q |
142 |
tggtaaattaagggtcmaacagtcgctagaggtatcaatcttaaaaaagatcccatacaacttgaggagttttaggtgtccaaaatgaacagaaatgctg |
241 |
Q |
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| T |
1845 |
cggtaaattaaggttcatagagtcactagagggatcaatgtcaaaaaagactccatacaagttgagaaattttagctgttgaaaatgaagagaggtagag |
1944 |
T |
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| Q |
242 |
ggaaattttatggtggagaacacatggagtaccaattctaattcttctaaggaggtgcagttgaaaagataatgagatgtaagagcagaaaagaggagct |
341 |
Q |
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| T |
1945 |
ggaaattttatggtagagtacactttaagccgcaactctagttcttgcaatgaagaagagccgaaaagataatcagatgtactaggagaaaaggggagtt |
2044 |
T |
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| Q |
342 |
gataaaaagatgaatggatccgaagaatttttactctcc---gattcaagatgctagagatccaagtattttgaagggata |
419 |
Q |
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||||||| |||||||||||| |||| | || ||||||| |||||||||| |||||||||| ||||||||||| |||| |
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| T |
2045 |
tataaaaatatgaatggatcctaagattcttgactctcctattattcaagatggtagagatccatgtattttgaagtgata |
2125 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.00000000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 104 - 230
Target Start/End: Original strand, 28111434 - 28111560
Alignment:
| Q |
104 |
gaccaattgcagtttttgatatcaaactttctaagaagtggtaaattaagggtcmaacagtcgctagaggtatcaatcttaaaaaagatcccatacaact |
203 |
Q |
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||||||| |||||| |||| ||||||||| ||| ||| |||||||||||| || | |||| ||||||| |||||| | |||||||| |||||||| | |
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| T |
28111434 |
gaccaatggcagttactgatctcaaactttttaacaagcggtaaattaaggttcatagagtcactagagggatcaatgtcaaaaaagactccatacaagt |
28111533 |
T |
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| Q |
204 |
tgaggagttttaggtgtccaaaatgaa |
230 |
Q |
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|||||| ||| || ||| |||||||| |
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| T |
28111534 |
tgaggaatttcagctgttgaaaatgaa |
28111560 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 386 - 459
Target Start/End: Original strand, 28111704 - 28111777
Alignment:
| Q |
386 |
aagatgctagagatccaagtattttgaagggatatatcacgcttgttattgatcagtaaagaaaatctttccaa |
459 |
Q |
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||||||||||||||||| ||||||||||| |||| | ||| ||||||| ||||| |||||||| ||||||| |
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| T |
28111704 |
aagatgctagagatccatgtattttgaagtgatacacaacgtttgttatagatcacaaaagaaaagttttccaa |
28111777 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 71 - 131
Target Start/End: Complemental strand, 7795631 - 7795571
Alignment:
| Q |
71 |
agaggagcttctaaaataagatcttttccacccgaccaattgcagtttttgatatcaaact |
131 |
Q |
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|||| |||||||| ||||| ||| ||||||| |||||||||||||| ||||| ||||||| |
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| T |
7795631 |
agagaagcttctacaataacatcctttccacttgaccaattgcagttcttgatctcaaact |
7795571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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