View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1317A-Insertion-5 (Length: 792)

Name: NF1317A-Insertion-5
Description: NF1317A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1317A-Insertion-5
NF1317A-Insertion-5
[»] chr3 (1 HSPs)
chr3 (8-790)||(52238592-52239372)


Alignment Details
Target: chr3 (Bit Score: 705; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 705; E-Value: 0
Query Start/End: Original strand, 8 - 790
Target Start/End: Complemental strand, 52239372 - 52238592
Alignment:
Q  8 aaattaaatatgttccgagtgttgaaatttttaccttcacgtgcttatgtggataagctcctgatttggaatttgcagatcgaagtattatcccaagatg 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52239372 aaattaaatatgttccgagtgttgaaatttttaccttcacgtgcttatgtggataagctcctgatttggaatttgcagatcgaagtattatcccaagatg 52239273  T
Q  108 agggtgatgtctcacagaaccaagaaattcaagaactccaagtaatttgcaacttacctacacatgtttcatttttatcaacttgtagaagaataacgat 207  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52239272 agggtgacgtctcacagaaccaagaaattcaagaactccaagtaatttgcaacttacctacacatgtttcatttttatcaacttgtagaagaataacgat 52239173  T
Q  208 attgagcatatatttctgtacacgatataggtcattgacaagaagatacaacaatggtctaaaggaaaggaaggaaatatacgctcactgttgtcaacat 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52239172 attgagcatatatttctgtacacgatataggtcattgacaagaagatacaacaatggtctaaaggaaaggaaggaaatatacgctcactgttgtcaacat 52239073  T
Q  308 tacaatacgtaagaatannnnnnnnnnnnnnnnntcgtctagtacttactattcttaacccatttgattgaaaattccatattttatttcctgttaacaa 407  Q
    |||||||||||||||||                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52239072 tacaatacgtaagaatatgtgtgtgtctgtgtgttcgtctagtacttactattcttaacccatttgattgaaaattccatattttatttcctgttaacaa 52238973  T
Q  408 caataaagcatgttggtatgccgtaaaaccattgattcagttaaggtttttagatccttggttccatccaagtacaaaattgttctaaaatggcttccat 507  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52238972 caataaagcatgttggtatgccgtaaaaccattgattcagttaaggtttttagatccttggttccatccaagtacaaaattgttctaaaatggcttccat 52238873  T
Q  508 catgaataaaggtactttggccaaactgtggctggaagcctgtgcctcttgttgatataattgaagggaatgcggttaaaagatcttatcaaagagcttt 607  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  52238872 catgaataaaggtactttggccaaactgtggctggaagcctgtgcctcttgttgatataattgaagggaacgcggttaaaagatcttatcaaagagcttt 52238773  T
Q  608 actcagtctgcatccagataagttgcagcaaaagggtgctacttcagaccaaaagtacactgcagaaaaagtttttgatattttacaggtactatgtttg 707  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  52238772 actcagtctgcatccggataagttgcagcaaaagggtgctacttcagaccaaaagtacactgcagaaaaagtttttgatattttgcaggtactatgtttg 52238673  T
Q  708 ggtcaatttattagcattacaaaaagtttgtctctttcataggcaatttctagaatcttgcttgaaattggtcataaacattc 790  Q
    ||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52238672 ggtcaatttattagcattacaaaaag--tgtctctttcataggcaatttctagaatcttgcttgaaattggtcataaacattc 52238592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 15938 times since January 2019
Visitors: 3757