View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1317A-Insertion-7 (Length: 536)
Name: NF1317A-Insertion-7
Description: NF1317A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1317A-Insertion-7 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 326; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 199 - 536
Target Start/End: Complemental strand, 7197932 - 7197595
Alignment:
| Q |
199 |
tgctgacatggctacttcttccagtgctgacatggctacttcttcctgtgctgacatggctgtttctgcttgaagaatcatagcttagtacatcatcttt |
298 |
Q |
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| T |
7197932 |
tgctgacatggctacttcttccagtgctgacatggctacttcttccagtgctgacatggctgtttctgcttgaagaatcatagcttagtacatcatcttt |
7197833 |
T |
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| Q |
299 |
tgtttcagcaccaagaactttctctaactcatcattgatgagtttgagatcattttcagttacttcgtcttcgttttcattttcggttatggtttgaact |
398 |
Q |
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| T |
7197832 |
tgtttcagcaccaagaactttctctaactcatcatttatgagtttgagatcattttcagttacttcgtcttcgttttcattttcggttatggtttgaact |
7197733 |
T |
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| Q |
399 |
gagattggaaatgatggtgttgatggatttgatgaaattggttggtctgatccaagtgttccaattgcaaggaagccagggaagagatcaaacatagcat |
498 |
Q |
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| T |
7197732 |
gagattggaaatgatggtgttgatagatttgatgaaattggttggtctgatccaagtgttccaattgcaaggaagccagggaagagatcaaacatagcat |
7197633 |
T |
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| Q |
499 |
catcatcttgtgattgtctgccatattcttcttcatgt |
536 |
Q |
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| T |
7197632 |
catcatcttgtgattgtctgccatattcttcttcatgt |
7197595 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 7 - 235
Target Start/End: Complemental strand, 7198100 - 7197872
Alignment:
| Q |
7 |
atttacttctctgaaaaagttcaccaagtgaagtcctatgttctttcttaccaacacttgtaactgctgtttcagacatttcaacagctgttccaaacaa |
106 |
Q |
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| T |
7198100 |
atttacttctctgaaaaagttcaccaagtgaagtcctatgttctttcttaccaacactagtaactgctgtttcagacatttcaacagctgttccaaacaa |
7198001 |
T |
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| Q |
107 |
ataaccttgtaaaggacaaacagcatttgtgtctgttccttcaataggttttccacttattgttactatgctgacatggctacttcttccagtgctgaca |
206 |
Q |
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| T |
7198000 |
ataaccttgtaaaggacaaacagcatttgtgtctgttccttcaattggttttccacttattgttactatgctgacatggctacttcttccagtgctgaca |
7197901 |
T |
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| Q |
207 |
tggctacttcttccagtgctgacatggct |
235 |
Q |
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| T |
7197900 |
tggctacttcttccagtgctgacatggct |
7197872 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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