View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1317A-Insertion-8 (Length: 301)
Name: NF1317A-Insertion-8
Description: NF1317A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1317A-Insertion-8 |
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| [»] chr6 (6 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 234; Significance: 1e-130; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 234; E-Value: 1e-130
Query Start/End: Original strand, 8 - 301
Target Start/End: Original strand, 2431353 - 2431645
Alignment:
| Q |
8 |
atgtcatcaccagtgtatctagtgacagcctagtaattcaagatgttcytagtgacaaggtatgnnnnnnnnnnttaaaattcattttactttatatcaa |
107 |
Q |
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| T |
2431353 |
atgtcatcaccagtgtatctagtgacagcctagtaattcaagatgttcttagtgacaaggtatgaaaaaaaaaaa-aaaattcattttactttatatcaa |
2431451 |
T |
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| Q |
108 |
atttgatttatagatagatgaaaatagaacatgtcatactaggtcatactttgattattaatgagtgtttattttcggaagtatacttccgtagatcaaa |
207 |
Q |
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| T |
2431452 |
atttgatttatagatagatgaaaatagaacatgtcatactaggtcatacttttattattaatgtgtgtttattttcggaagtatacttccgtagaccaaa |
2431551 |
T |
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| Q |
208 |
aatgtgggcttattttacggaagtatacttccggatgaatatcctctttttaagcctatttaaagaccgactttacattgaagttctataatta |
301 |
Q |
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| T |
2431552 |
aatgtgggtttattttacggaagtatacttccggatgaatatcctctttttaagcctatttaaagaccgactttacattgaagttctataatta |
2431645 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 10 - 68
Target Start/End: Original strand, 2447431 - 2447489
Alignment:
| Q |
10 |
gtcatcaccagtgtatctagtgacagcctagtaattcaagatgttcytagtgacaaggt |
68 |
Q |
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| T |
2447431 |
gtcatcaccaatgtctctagtgacagcctaataattcaagatgtccttagtgaaaaggt |
2447489 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 10 - 70
Target Start/End: Original strand, 2584081 - 2584141
Alignment:
| Q |
10 |
gtcatcaccagtgtatctagtgacagcctagtaattcaagatgttcytagtgacaaggtat |
70 |
Q |
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| T |
2584081 |
gtcatcacaagtgtctctaacgacatcctagtaattcaagatgttcttagtgaaaaggtat |
2584141 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 10 - 70
Target Start/End: Complemental strand, 2678951 - 2678891
Alignment:
| Q |
10 |
gtcatcaccagtgtatctagtgacagcctagtaattcaagatgttcytagtgacaaggtat |
70 |
Q |
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| T |
2678951 |
gtcatcacaagtgtctctaacgacagcctagtgattcaagatgttcttagtgaaaaggtat |
2678891 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 70
Target Start/End: Original strand, 2617866 - 2617926
Alignment:
| Q |
10 |
gtcatcaccagtgtatctagtgacagcctagtaattcaagatgttcytagtgacaaggtat |
70 |
Q |
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| T |
2617866 |
gtcatcacaagtgtctcaaacgacatcctagtaattcaagatgttcttagtgaaaaggtat |
2617926 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 70
Target Start/End: Complemental strand, 2646550 - 2646490
Alignment:
| Q |
10 |
gtcatcaccagtgtatctagtgacagcctagtaattcaagatgttcytagtgacaaggtat |
70 |
Q |
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|||||||||||||| |||| ||||| || ||||||||||| |||| |||||| ||||||| |
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| T |
2646550 |
gtcatcaccagtgtctctaacgacagtctggtaattcaagacgttcttagtgaaaaggtat |
2646490 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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