View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1381-INSERTION-3 (Length: 646)
Name: NF1381-INSERTION-3
Description: NF1381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1381-INSERTION-3 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 612; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 612; E-Value: 0
Query Start/End: Original strand, 7 - 646
Target Start/End: Complemental strand, 13768736 - 13768097
Alignment:
| Q |
7 |
agtaacgtacttcatgagttcattttttgccatattttttccctttataggaatctctttctcaaactcattggttctttccacattgcatttttcaatc |
106 |
Q |
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| T |
13768736 |
agtaacatacttcatgagttcattttttgccatattttttccctttataggaatctctttctcaaactcattggttctttccacattgcatttttcaatc |
13768637 |
T |
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| Q |
107 |
acaacactatcaaactctcttctaaattgttctggttcagaagcttttgtgtccctttcttttagtgcttgttccaatacaaaaagatgtagttgaagat |
206 |
Q |
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| T |
13768636 |
acaacactatcaaactctcttctaaattgttctggttcagaagcttttgcgtccctttcttttagtgcttgttccaatacaaaaagatgtagttgaagat |
13768537 |
T |
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| Q |
207 |
aatttattttattctcttcctcttccaacttatgttccaagctatctatcttttgcttgagtcttacattaaaatctacttgagcaagtagtgaattttc |
306 |
Q |
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| T |
13768536 |
aatttattttattctcttcctcttccaacttatgttccaagctatctatcttttgcttgagtcttacattaaaatctacttgagcaagtagtgaattttc |
13768437 |
T |
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| Q |
307 |
gagtgcttttcgcattacgcggttttcttcaagatcgttcttcaaacttttgacaaacgacttccacatttgtaattcaaattccatttcacttatttca |
406 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13768436 |
gagtgcttttcgcattacgcggctttcttcaagatcgttcttcaaacttttgacaaacgacttccacatttgtaattcaaattccatttcacttatttca |
13768337 |
T |
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| Q |
407 |
catgttctatcatccaattcaatgtttggcttgtctagagcattataaactccgaaaagttgttccttcaaatccattttggttttacactttgttgatt |
506 |
Q |
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| T |
13768336 |
catgttctatcatccaattcaatatttggcttgtctagagcattataaacttcgaaaagttgttccttcaaatccattttggttttacactttgttgatt |
13768237 |
T |
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| Q |
507 |
cttcaagcatatccttgtggatattatgttcattacgctgcgaattctgtaattctttgtgctcagaaattccttcctttaacactagcagcataacaaa |
606 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13768236 |
cttcaagcatatccttgtggatattatgttctttacgctgcgaattctgtaattcattgtgctcagaaattccttcctttaacactagcagcataacaaa |
13768137 |
T |
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| Q |
607 |
catctcttcattgagcaacatcatctcaatattaaaagat |
646 |
Q |
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| T |
13768136 |
catctcttcattgagcaacatcatctcaatattaaaagat |
13768097 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 330 - 427
Target Start/End: Complemental strand, 28765467 - 28765370
Alignment:
| Q |
330 |
tttcttcaagatcgttcttcaaacttttgacaaacgacttccacatttgtaattcaaattccatttcacttatttcacatgttctatcatccaattca |
427 |
Q |
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||||||||||||| |||||||||| | | || |||||||| ||||| ||||||||||||||||||||| |||| || |||| ||||||| |||| |
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| T |
28765467 |
tttcttcaagatcattcttcaaacgatcaagaattgacttccatatttgcaattcaaattccatttcacttctttcgcaaattctctcatccagttca |
28765370 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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