View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1381_high_1 (Length: 514)
Name: NF1381_high_1
Description: NF1381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1381_high_1 |
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Alignment Details
Target: chr2 (Bit Score: 327; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 29 - 401
Target Start/End: Complemental strand, 8499315 - 8498941
Alignment:
| Q |
29 |
acgttgttcaaataaagatgaagttaataatttcacttagattttatttgttttgttgttagaaaaaggatactctcctagctagctagtagtaacacag |
128 |
Q |
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| T |
8499315 |
acgttgttgaaataaagatgaagttaacaatttcccttagattttatttgttttgttgttagaaaaaggatactctcctagctagctaggagtaacacag |
8499216 |
T |
|
| Q |
129 |
a--aacacacagttaatttaccaaagacaagtgtaaattaaatgattgccaaactatggacgtgtggttgtaggatgtatgtagtatttagatttgtgac |
226 |
Q |
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| T |
8499215 |
agaaacacacagttaatttaccaaagacaagtgtaaattaaatgattgccaaactatggacgtgtggttgtaggatgtatgtagtatttagatttgtgac |
8499116 |
T |
|
| Q |
227 |
attttccaacctgacgcaccatcttacgcaacaatttgggatagtnnnnnnntaataataaatatcgtggaattttctaaaaatccaaatttcattttcc |
326 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8499115 |
attttccaacctgacgcaccatcttacgcaacaatttgggatagtaaaaaaataataataaatatcgtggaattttctaaaaatccaaatttcattttcc |
8499016 |
T |
|
| Q |
327 |
atctggtccacgttccttcaattccaaactctttttataccctaatccattgcactattgaaagacttcatctac |
401 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8499015 |
atctggtccacgttccttcaattccaaactctttttataccctaatccattgcactattgaaagacttcatctac |
8498941 |
T |
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