View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1381_high_10 (Length: 277)
Name: NF1381_high_10
Description: NF1381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1381_high_10 |
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Alignment Details
Target: chr1 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 48518068 - 48517847
Alignment:
| Q |
1 |
taacaatatttaacagaattatcaaaacgactgcaacatttatgcttgtagtatactatggagaaaataaaataaaaataagttttaagaattttaattc |
100 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48518068 |
taacaatatttaacagaattatcaaaactactgcaacatttatgcttgtagtatactatggagaaaataaaataaaaataagttttaagaattttaattc |
48517969 |
T |
|
| Q |
101 |
aaagtcttaattctcagtgaccgcgtcctctgcgacttggtccagaataagcctggttgattattaaacttaagaatgatggaggagattgatctttcag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48517968 |
aaagtcttaattctcagtgaccgcgtcctctgcgacttggtccagaataagcctggttgattattaaacttaagaatgatggaggagattgatctttcag |
48517869 |
T |
|
| Q |
201 |
aggtctcatgccttgaacattc |
222 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
48517868 |
aggtctcatgccttgaacattc |
48517847 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 114 - 206
Target Start/End: Original strand, 206999 - 207091
Alignment:
| Q |
114 |
tcagtgaccgcgtcctctgcgacttggtccagaataagcctggttgattattaaacttaagaatgatggaggagattgatctttcagaggtct |
206 |
Q |
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||||||||| |||||| || | ||||||||||||||||||||||||||||||||||||| || || |||| |||||||||||| |||||||| |
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| T |
206999 |
tcagtgaccacgtcctttgtggcttggtccagaataagcctggttgattattaaacttatgacggaaggagcagattgatctttgagaggtct |
207091 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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