View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1381_high_12 (Length: 276)
Name: NF1381_high_12
Description: NF1381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1381_high_12 |
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Alignment Details
Target: chr1 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 54 - 257
Target Start/End: Complemental strand, 36947116 - 36946915
Alignment:
| Q |
54 |
catgttagaagcaaaaggtattattgacattgattattctctatctttacttcattttgcagctgaagttagctcaataccaattgtggatgattctggt |
153 |
Q |
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| T |
36947116 |
catgttagaagcaaaaggtattattgacattgaatattctctatctttacttcattttgcagctgaagttagctcaataccaattgtggatgattctggt |
36947017 |
T |
|
| Q |
154 |
tcattatatgatgtatattcaagaaggtagaaactcttttttcttccttgtgctaagaacagctagacattttggaagcttatttatgtattgctatatt |
253 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
36947016 |
tcattatatgatgtatattcaagaaggtagaaactc--ttttcttccttgtgctaagaacagctagacattttggaagcttatttatgtattgctatttt |
36946919 |
T |
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| Q |
254 |
cttc |
257 |
Q |
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|||| |
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| T |
36946918 |
cttc |
36946915 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 109 - 183
Target Start/End: Original strand, 46667663 - 46667737
Alignment:
| Q |
109 |
tttgcagctgaagttagctcaataccaattgtggatgattctggttcattatatgatgtatattcaagaaggtag |
183 |
Q |
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||||||||| |||||||||||||||||||||||||||| || |||||| ||| ||||||||||||||||| |
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| T |
46667663 |
tttgcagctaaagttagctcaataccaattgtggatgaaaatgattcattgcttgacatatattcaagaaggtag |
46667737 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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