View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1381_high_14 (Length: 259)
Name: NF1381_high_14
Description: NF1381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1381_high_14 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 12 - 259
Target Start/End: Complemental strand, 48518302 - 48518062
Alignment:
| Q |
12 |
atgaacaagaatataatggcaattatataaagaattgagagaacttagagagagtaaattgtagaatggattatctttattatttccttgatgaacaatt |
111 |
Q |
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| T |
48518302 |
atgaacaagaatatagtggcaattatataaagaattgagagactttagagagagtaaattgtagaatggattatctttattatttccttgatgaacaatt |
48518203 |
T |
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| Q |
112 |
acaatccttatgcaggcctaacaattataactaattagtaacgtactaactaacttggttacattctgtattaattaagcaactaattacataatgtctc |
211 |
Q |
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| T |
48518202 |
acaatccttatgtaggcctaacaattatcactaactagtaacgtactaactaacttggttacattctg--tta--taagcaacta---acataatgtctc |
48518110 |
T |
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| Q |
212 |
cccttggctaacttccaactctatgaagtttcaagtcataataacaat |
259 |
Q |
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| T |
48518109 |
cccttggctaacttccaactctatgaagtttcaagtcataataacaat |
48518062 |
T |
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