View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1381_high_16 (Length: 251)
Name: NF1381_high_16
Description: NF1381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1381_high_16 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 150; Significance: 2e-79; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 23 - 251
Target Start/End: Original strand, 45708866 - 45709097
Alignment:
| Q |
23 |
atcatcatttcccacccattgatagtcatactgcaaaaccaattaaataaattcagtacattagtcaccaaacttgtaaattaaactt--nnnnnnnnnn |
120 |
Q |
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| T |
45708866 |
atcatcatttcccacccattgatagtcatactgcaaaaccaattaaataaattcagtacattagtcaccaaacttgtaaattaaacttaaaaaaaaaaaa |
45708965 |
T |
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| Q |
121 |
nncaaagagtactccatccttaaatataagagcacattgattaaattttattgttgatgtaattaaaataactaggagtactctttc-nnnnnnnnntat |
219 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
45708966 |
aacaaagagtactccatccttaaatataagagcacattgattaaattttattgttgatgtaattaaaataactaggagtactctttcaaaaaaaagatat |
45709065 |
T |
|
| Q |
220 |
taataactaggagtagtattttaataaagaaa |
251 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
45709066 |
taataactaggagtagtattttaataaagaaa |
45709097 |
T |
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