View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1381_high_4 (Length: 356)
Name: NF1381_high_4
Description: NF1381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1381_high_4 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 335
Target Start/End: Original strand, 28928476 - 28928818
Alignment:
| Q |
1 |
atcatcttaatacactatagcttatctctttg-aaaatattcaagttaacaacaacgtgtaactttcacaaacaccttatgtgtatatcataagttggtt |
99 |
Q |
| |
|
|||||||||||| |||||||||||||||||| |||| |||||||||||||| ||| ||||||||||||||||||||||||||||||||| ||||| ||| |
|
|
| T |
28928476 |
atcatcttaatagactatagcttatctctttataaaagattcaagttaacaaaaacatgtaactttcacaaacaccttatgtgtatatcacaagtttgtt |
28928575 |
T |
|
| Q |
100 |
catnnnnnnn-gtatatcacaagtttaaggccgctacattgtgcaacatgttgacagtggcacct------atatcatttcatttactataagcaactcg |
192 |
Q |
| |
|
||| ||||| ||||||||||||||| |||||| ||||||||||||||| ||||||||| ||||||||| ||||||||||||||||||| |
|
|
| T |
28928576 |
cataaaaaaaagtataccacaagtttaaggcccctacatggtgcaacatgttgactgtggcacctccacatatatcattttatttactataagcaactcg |
28928675 |
T |
|
| Q |
193 |
aagaattctacacaataaaattgatttgatgttttctcaccattactaatgcaccttcaagttgttggtgtggaactggtgtacttattattatgtggtt |
292 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28928676 |
aagaattctacacaataaaattgctttgatgttttctcaccattactaatgcaccttcaagttgttggtgtggaactggtgtacttattattatgtggtt |
28928775 |
T |
|
| Q |
293 |
taaaataattcgaaagattataaaactcacatgttcatctcac |
335 |
Q |
| |
|
|||||||||| ||||||||||| ||||||| |||||||||||| |
|
|
| T |
28928776 |
taaaataatttgaaagattatataactcacctgttcatctcac |
28928818 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 13453 times since January 2019
Visitors: 8302