View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend |
| Query |
| Query hiting target |
| Query hiting target's complemental strand |
| Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1381_low_1 (Length: 514)
Name: NF1381_low_1
Description: NF1381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[»] NF1381_low_1 |
| |
|
Alignment Details
Target: chr2 (Bit Score: 327; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 29 - 401
Target Start/End: Complemental strand, 8499315 - 8498941
Alignment:
Q |
29 |
acgttgttcaaataaagatgaagttaataatttcacttagattttatttgttttgttgttagaaaaaggatactctcctagctagctagtagtaacacag |
128 |
Q |
|
|
|||||||| |||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
T |
8499315 |
acgttgttgaaataaagatgaagttaacaatttcccttagattttatttgttttgttgttagaaaaaggatactctcctagctagctaggagtaacacag |
8499216 |
T |
|
Q |
129 |
a--aacacacagttaatttaccaaagacaagtgtaaattaaatgattgccaaactatggacgtgtggttgtaggatgtatgtagtatttagatttgtgac |
226 |
Q |
|
|
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
T |
8499215 |
agaaacacacagttaatttaccaaagacaagtgtaaattaaatgattgccaaactatggacgtgtggttgtaggatgtatgtagtatttagatttgtgac |
8499116 |
T |
|
Q |
227 |
attttccaacctgacgcaccatcttacgcaacaatttgggatagtnnnnnnntaataataaatatcgtggaattttctaaaaatccaaatttcattttcc |
326 |
Q |
|
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
T |
8499115 |
attttccaacctgacgcaccatcttacgcaacaatttgggatagtaaaaaaataataataaatatcgtggaattttctaaaaatccaaatttcattttcc |
8499016 |
T |
|
Q |
327 |
atctggtccacgttccttcaattccaaactctttttataccctaatccattgcactattgaaagacttcatctac |
401 |
Q |
|
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
T |
8499015 |
atctggtccacgttccttcaattccaaactctttttataccctaatccattgcactattgaaagacttcatctac |
8498941 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 9340 times since January 2019
Visitors: 7893