View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1381_low_10 (Length: 325)
Name: NF1381_low_10
Description: NF1381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1381_low_10 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 150; Significance: 3e-79; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 104 - 325
Target Start/End: Original strand, 6991534 - 6991753
Alignment:
| Q |
104 |
catttcaattttctcnnnnnnngtttcttcattattctgcttactgcaactataccattgattggtaccaattatttcaagnnnnnnnnnntctgtgtgg |
203 |
Q |
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| T |
6991534 |
catttcaattttctctttttttgtttcttcattattctgcttactgcaactatagcattgattggtaccaattatttcaagaaaaaaat--tctgtgtgg |
6991631 |
T |
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| Q |
204 |
gtgtcttgggttttaaattggcagcgagaccgttggtgtaaatcagttttacactgacatccattaggaatcctctatttttgcatgttgttaaagagtc |
303 |
Q |
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|||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6991632 |
gtgtgttgggttttaaattggcagagagaccgttggtgtaaatcagttttacactgacatccattaggaatcctctatttttgcatgttgttaaagagtc |
6991731 |
T |
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| Q |
304 |
tcacatcggataagaaaaaggt |
325 |
Q |
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||||||||||||||||||||| |
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| T |
6991732 |
ccacatcggataagaaaaaggt |
6991753 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 239 - 285
Target Start/End: Original strand, 18039651 - 18039697
Alignment:
| Q |
239 |
gtgtaaatcagttttacactgacatccattaggaatcctctattttt |
285 |
Q |
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| T |
18039651 |
gtgtaaatcagtattacactcacatccaataggaatcctctaatttt |
18039697 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 292 - 320
Target Start/End: Original strand, 38629807 - 38629835
Alignment:
| Q |
292 |
tgttaaagagtctcacatcggataagaaa |
320 |
Q |
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| T |
38629807 |
tgttaaagagtctcacatcggataagaaa |
38629835 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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