View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1381_low_11 (Length: 310)

Name: NF1381_low_11
Description: NF1381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1381_low_11
NF1381_low_11
[»] chr2 (4 HSPs)
chr2 (87-215)||(30931272-30931400)
chr2 (87-215)||(30910333-30910461)
chr2 (87-195)||(30919802-30919910)
chr2 (138-215)||(40028253-40028329)
[»] chr8 (10 HSPs)
chr8 (88-192)||(29253757-29253861)
chr8 (106-195)||(29310868-29310960)
chr8 (91-165)||(29245448-29245522)
chr8 (88-189)||(29223546-29223646)
chr8 (88-164)||(29215275-29215351)
chr8 (104-161)||(29363700-29363757)
chr8 (91-172)||(29285511-29285594)
chr8 (106-165)||(29317347-29317406)
chr8 (104-165)||(29340310-29340371)
chr8 (104-161)||(29357141-29357198)
[»] chr3 (1 HSPs)
chr3 (106-163)||(43815346-43815403)
[»] chr5 (1 HSPs)
chr5 (87-159)||(14497823-14497895)
[»] chr4 (1 HSPs)
chr4 (103-159)||(43729765-43729821)


Alignment Details
Target: chr2 (Bit Score: 121; Significance: 5e-62; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 87 - 215
Target Start/End: Complemental strand, 30931400 - 30931272
Alignment:
Q  87 tatagattgcgttgtgtctcataaacaaccagcctttgatcatcctctattgaaaggacaaaaaccattggtattttttgttaattgaattaaggaaaat 186  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  30931400 tatagattgcgttgtgtctcataaacaaccagcttttgatcatcctctattgaaaggacaaaaaccattggtattgtttgttaattgaattaaggaaaat 30931301  T
Q  187 tcaaaaatatatattttgaatctaattaa 215  Q
    |||||||||||||||||||||||||||||    
T  30931300 tcaaaaatatatattttgaatctaattaa 30931272  T

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Target: chr2; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 87 - 215
Target Start/End: Complemental strand, 30910461 - 30910333
Alignment:
Q  87 tatagattgcgttgtgtctcataaacaaccagcctttgatcatcctctattgaaaggacaaaaaccattggtattttttgttaattgaattaaggaaaat 186  Q
    |||||| || ||| ||||||| ||||||||||| |||||||||| ||| |||||||||||||||| |||||||||||| || |||||||||||| |||||    
T  30910461 tatagactgtgttctgtctcacaaacaaccagcttttgatcatcttctgttgaaaggacaaaaactattggtatttttcgtcaattgaattaagaaaaat 30910362  T
Q  187 tcaaaaatatatattttgaatctaattaa 215  Q
    ||| |||||||| ||||||| ||||||||    
T  30910361 tcataaatatattttttgaaactaattaa 30910333  T

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Target: chr2; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 87 - 195
Target Start/End: Complemental strand, 30919910 - 30919802
Alignment:
Q  87 tatagattgcgttgtgtctcataaacaaccagcctttgatcatcctctattgaaaggacaaaaaccattggtattttttgttaattgaattaaggaaaat 186  Q
    |||||| || ||||||||||| ||||||||||| |||||||||||| |||| ||||||||||||||| |||||||||| |||||||||||||||||||||    
T  30919910 tatagactgtgttgtgtctcacaaacaaccagcttttgatcatcctttattaaaaggacaaaaaccactggtatttttcgttaattgaattaaggaaaat 30919811  T
Q  187 tcaaaaata 195  Q
    ||| |||||    
T  30919810 tcataaata 30919802  T

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Target: chr2; HSP #4
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 138 - 215
Target Start/End: Original strand, 40028253 - 40028329
Alignment:
Q  138 gaaaggacaaaaaccattggtattttttgttaattgaattaaggaaaattcaaaaatatatattttgaatctaattaa 215  Q
    ||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||| | ||||||| ||||||||    
T  40028253 gaaaggacaaaaaccattggtatgttttgttaattgaatcaaggaaaattcaaaaatatgt-ttttgaagctaattaa 40028329  T

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Target: chr8 (Bit Score: 81; Significance: 4e-38; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 88 - 192
Target Start/End: Original strand, 29253757 - 29253861
Alignment:
Q  88 atagattgcgttgtgtctcataaacaaccagcctttgatcatcctctattgaaaggacaaaaaccattggtattttttgttaattgaattaaggaaaatt 187  Q
    |||||||| ||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| |||||||||    
T  29253757 atagattgtgttatgtctcataaacaaccagcttttgatcatcctctattgaaaggacaaaaaccattggtatttttggttaattggattgaggaaaatt 29253856  T
Q  188 caaaa 192  Q
    |||||    
T  29253857 caaaa 29253861  T

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Target: chr8; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 106 - 195
Target Start/End: Original strand, 29310868 - 29310960
Alignment:
Q  106 cataaacaaccagcctttgatcatcctctattgaaaggacaaaaaccattggtatt---ttttgttaattgaattaaggaaaattcaaaaata 195  Q
    |||||||||||||| |||||||||||| ||||||||||||||||||||||||||||   ||||||||||| ||||||  ||||||||||||||    
T  29310868 cataaacaaccagcttttgatcatcctttattgaaaggacaaaaaccattggtatttccttttgttaatttaattaataaaaattcaaaaata 29310960  T

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Target: chr8; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 91 - 165
Target Start/End: Original strand, 29245448 - 29245522
Alignment:
Q  91 gattgcgttgtgtctcataaacaaccagcctttgatcatcctctattgaaaggacaaaaaccattggtatttttt 165  Q
    |||||| || || |||||||||||||||| |||||||||||| ||||||||||||||||||||||||||| ||||    
T  29245448 gattgcattttgactcataaacaaccagcttttgatcatcctttattgaaaggacaaaaaccattggtatatttt 29245522  T

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Target: chr8; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 88 - 189
Target Start/End: Original strand, 29223546 - 29223646
Alignment:
Q  88 atagattgcgttgtgtctcataaacaaccagcctttgatcatcctctattgaaaggacaaaaaccattggtattttttgttaattgaattaaggaaaatt 187  Q
    |||||||| ||||||| | ||||||||| ||| || |||||| |||||||||||| ||||||| |||||||| |||| ||| ||| ||||||||||||||    
T  29223546 atagattgtgttgtgtttgataaacaactagctttcgatcattctctattgaaagaacaaaaatcattggta-ttttggtttattaaattaaggaaaatt 29223644  T
Q  188 ca 189  Q
    ||    
T  29223645 ca 29223646  T

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Target: chr8; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 88 - 164
Target Start/End: Complemental strand, 29215351 - 29215275
Alignment:
Q  88 atagattgcgttgtgtctcataaacaaccagcctttgatcatcctctattgaaaggacaaaaaccattggtattttt 164  Q
    |||||||| ||||| |||||||||||||| || ||||||||||||   |||| ||||||||||||||||||||||||    
T  29215351 atagattgtgttgtatctcataaacaaccggcttttgatcatcctacgttgagaggacaaaaaccattggtattttt 29215275  T

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Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 104 - 161
Target Start/End: Original strand, 29363700 - 29363757
Alignment:
Q  104 ctcataaacaaccagcctttgatcatcctctattgaaaggacaaaaaccattggtatt 161  Q
    ||||||||||   ||| |||||||||||||||||||||||||||||||||||||||||    
T  29363700 ctcataaacagttagcttttgatcatcctctattgaaaggacaaaaaccattggtatt 29363757  T

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Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 91 - 172
Target Start/End: Original strand, 29285511 - 29285594
Alignment:
Q  91 gattgcgttgtgtctcataaacaaccagcctttgatcatcctctattgaaaggacaaaaaccattggtat--tttttgttaatt 172  Q
    |||||| || || |||| ||||||||||| |||||||||| | |||||||||| ||||||||||||||||  ||||||||||||    
T  29285511 gattgcattttgactcacaaacaaccagcttttgatcatcatttattgaaagggcaaaaaccattggtattatttttgttaatt 29285594  T

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Target: chr8; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 106 - 165
Target Start/End: Original strand, 29317347 - 29317406
Alignment:
Q  106 cataaacaaccagcctttgatcatcctctattgaaaggacaaaaaccattggtatttttt 165  Q
    |||||||||| ||| |||||||||||  ||||||||||||||||||||||||||| ||||    
T  29317347 cataaacaactagcttttgatcatcccttattgaaaggacaaaaaccattggtatatttt 29317406  T

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Target: chr8; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 104 - 165
Target Start/End: Original strand, 29340310 - 29340371
Alignment:
Q  104 ctcataaacaaccagcctttgatcatcctctattgaaaggacaaaaaccattggtatttttt 165  Q
    |||||||||||| ||| |||||||||||  |||||||||| |||||||||||||||| ||||    
T  29340310 ctcataaacaactagcttttgatcatcccttattgaaagggcaaaaaccattggtatatttt 29340371  T

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Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 104 - 161
Target Start/End: Original strand, 29357141 - 29357198
Alignment:
Q  104 ctcataaacaaccagcctttgatcatcctctattgaaaggacaaaaaccattggtatt 161  Q
    ||||||||||||| || || ||||||||| |||||||||||  |||||||||||||||    
T  29357141 ctcataaacaaccggctttcgatcatcctttattgaaaggaacaaaaccattggtatt 29357198  T

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Target: chr3 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 106 - 163
Target Start/End: Complemental strand, 43815403 - 43815346
Alignment:
Q  106 cataaacaaccagcctttgatcatcctctattgaaaggacaaaaaccattggtatttt 163  Q
    |||||||||||||| |||||||||||| |||||||||| |||||||||||||||||||    
T  43815403 cataaacaaccagcttttgatcatcctttattgaaagggcaaaaaccattggtatttt 43815346  T

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Target: chr5 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 87 - 159
Target Start/End: Complemental strand, 14497895 - 14497823
Alignment:
Q  87 tatagattgcgttgtgtctcataaacaaccagcctttgatcatcctctattgaaaggacaaaaaccattggta 159  Q
    |||||| ||||||| ||||||| |||||||||| |||||||||||| | || |||||||||| |||| |||||    
T  14497895 tatagaatgcgttgcgtctcatcaacaaccagcttttgatcatcctatgttaaaaggacaaagaccactggta 14497823  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 103 - 159
Target Start/End: Complemental strand, 43729821 - 43729765
Alignment:
Q  103 tctcataaacaaccagcctttgatcatcctctattgaaaggacaaaaaccattggta 159  Q
    |||||| |||||||||| ||||| ||||| ||| | |||||||||||||||||||||    
T  43729821 tctcatcaacaaccagcttttgaccatccactactcaaaggacaaaaaccattggta 43729765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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