View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1381_low_13 (Length: 306)
Name: NF1381_low_13
Description: NF1381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1381_low_13 |
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Alignment Details
Target: chr8 (Bit Score: 160; Significance: 3e-85; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 84 - 243
Target Start/End: Complemental strand, 25881852 - 25881693
Alignment:
| Q |
84 |
ttctggtgttatgacaatccgtagcttaagaaagcagaatacattttgtcaggaaaatattgacaaggtgaatgcaagtctaagaatggatttccataac |
183 |
Q |
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| T |
25881852 |
ttctggtgttatgacaatccgtagcttaagaaagcagaatacattttgtcaggaaaatattgacaaggtgaatgcaagtctaagaatggatttccataac |
25881753 |
T |
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| Q |
184 |
aatggtgcaaatgaatggcttggttttcgtttagactataatggagttgttttcctttgc |
243 |
Q |
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| T |
25881752 |
aatggtgcaaatgaatggcttggttttcgtttagactataatggagttgttttcctttgc |
25881693 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 124; Significance: 8e-64; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 84 - 243
Target Start/End: Complemental strand, 14316748 - 14316589
Alignment:
| Q |
84 |
ttctggtgttatgacaatccgtagcttaagaaagcagaatacattttgtcaggaaaatattgacaaggtgaatgcaagtctaagaatggatttccataac |
183 |
Q |
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| T |
14316748 |
ttctggtgttatgacaatccgttgcttaagaaagcagaatgcattttctcaagaaaatattgacagggtgaatgcaagtctaagaatggattttcataac |
14316649 |
T |
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| Q |
184 |
aatggtgcaaatgaatggcttggttttcgtttagactataatggagttgttttcctttgc |
243 |
Q |
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| T |
14316648 |
aatggtgcaaatgaatggcttggttttcgtttggactatatgggagttgttttcctttgc |
14316589 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 84 - 223
Target Start/End: Complemental strand, 14300274 - 14300135
Alignment:
| Q |
84 |
ttctggtgttatgacaatccgtagcttaagaaagcagaatacattttgtcaggaaaatattgacaaggtgaatgcaagtctaagaatggatttccataac |
183 |
Q |
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|||||||||||||||||||||||||| ||||||||||||| |||||| ||| |||||| |||||| ||||||||||||||||||||||||||| |||||| |
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| T |
14300274 |
ttctggtgttatgacaatccgtagctcaagaaagcagaatgcattttctcaagaaaatgttgacagggtgaatgcaagtctaagaatggattttcataac |
14300175 |
T |
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| Q |
184 |
aatggtgcaaatgaatggcttggttttcgtttagactata |
223 |
Q |
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| T |
14300174 |
aatggtgcaaatgaatggcttggttttcgcttggactata |
14300135 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 84 - 243
Target Start/End: Complemental strand, 14278537 - 14278378
Alignment:
| Q |
84 |
ttctggtgttatgacaatccgtagcttaagaaagcagaatacattttgtcaggaaaatattgacaaggtgaatgcaagtctaagaatggatttccataac |
183 |
Q |
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|||||||||||||||||| ||||||||||||||||||||| |||||| ||||| |||| |||||| ||||||||||||| ||||||||||||| |||||| |
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| T |
14278537 |
ttctggtgttatgacaattcgtagcttaagaaagcagaatgcattttctcagggaaatgttgacagggtgaatgcaagtataagaatggattttcataac |
14278438 |
T |
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| Q |
184 |
aatggtgcaaatgaatggcttggttttcgtttagactataatggagttgttttcctttgc |
243 |
Q |
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| T |
14278437 |
attggtgcaaatgaatggcttggttttcgcttggactatacgggagtgattttcctttgc |
14278378 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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