View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1381_low_14 (Length: 305)
Name: NF1381_low_14
Description: NF1381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1381_low_14 |
 | |
|
| [»] chr8 (1 HSPs) |
| |
|
| [»] chr2 (3 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 84 - 305
Target Start/End: Complemental strand, 25881852 - 25881631
Alignment:
| Q |
84 |
ttctggtgttatgacaatccgtagcttaagaaagcagaatacattttgtcaggaaaatattgacaaggtgaatgcaagtctaagaatggatttccataac |
183 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25881852 |
ttctggtgttatgacaatccgtagcttaagaaagcagaatacattttgtcaggaaaatattgacaaggtgaatgcaagtctaagaatggatttccataac |
25881753 |
T |
|
| Q |
184 |
aatggtgcaaatgaatggcttggttttcgtttagactataatggagttgttttcctttgcactgccaccctttttatgatctttttgccaagttcttttg |
283 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
25881752 |
aatggtgcaaatgaatggcttggttttcgtttagactataatggagttgttttcctttgcactgccaccctttttatgatctttttaccaagttcttttg |
25881653 |
T |
|
| Q |
284 |
ttaagtcaggtacaatcccttt |
305 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
25881652 |
ttaagtcaggtacaatcccttt |
25881631 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 170; Significance: 3e-91; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 84 - 305
Target Start/End: Complemental strand, 14316748 - 14316527
Alignment:
| Q |
84 |
ttctggtgttatgacaatccgtagcttaagaaagcagaatacattttgtcaggaaaatattgacaaggtgaatgcaagtctaagaatggatttccataac |
183 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||| |||||| ||| ||||||||||||| ||||||||||||||||||||||||||| |||||| |
|
|
| T |
14316748 |
ttctggtgttatgacaatccgttgcttaagaaagcagaatgcattttctcaagaaaatattgacagggtgaatgcaagtctaagaatggattttcataac |
14316649 |
T |
|
| Q |
184 |
aatggtgcaaatgaatggcttggttttcgtttagactataatggagttgttttcctttgcactgccaccctttttatgatctttttgccaagttcttttg |
283 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||| || ||| |
|
|
| T |
14316648 |
aatggtgcaaatgaatggcttggttttcgtttggactatatgggagttgttttcctttgcattgccaccctttttatgatctttttgccaagtgctattg |
14316549 |
T |
|
| Q |
284 |
ttaagtcaggtacaatcccttt |
305 |
Q |
| |
|
||||| |||||||||||||||| |
|
|
| T |
14316548 |
ttaagccaggtacaatcccttt |
14316527 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 134; E-Value: 9e-70
Query Start/End: Original strand, 84 - 305
Target Start/End: Complemental strand, 14278537 - 14278316
Alignment:
| Q |
84 |
ttctggtgttatgacaatccgtagcttaagaaagcagaatacattttgtcaggaaaatattgacaaggtgaatgcaagtctaagaatggatttccataac |
183 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||| |||||| ||||| |||| |||||| ||||||||||||| ||||||||||||| |||||| |
|
|
| T |
14278537 |
ttctggtgttatgacaattcgtagcttaagaaagcagaatgcattttctcagggaaatgttgacagggtgaatgcaagtataagaatggattttcataac |
14278438 |
T |
|
| Q |
184 |
aatggtgcaaatgaatggcttggttttcgtttagactataatggagttgttttcctttgcactgccaccctttttatgatctttttgccaagttcttttg |
283 |
Q |
| |
|
| ||||||||||||||||||||||||||| || ||||||| ||||| |||||||||||| ||||||||||||||||||||||||||||||| || ||| |
|
|
| T |
14278437 |
attggtgcaaatgaatggcttggttttcgcttggactatacgggagtgattttcctttgcattgccaccctttttatgatctttttgccaagtgctattg |
14278338 |
T |
|
| Q |
284 |
ttaagtcaggtacaatcccttt |
305 |
Q |
| |
|
||| | |||||| | ||||||| |
|
|
| T |
14278337 |
ttaggccaggtatattcccttt |
14278316 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 129; E-Value: 9e-67
Query Start/End: Original strand, 84 - 276
Target Start/End: Complemental strand, 14300274 - 14300082
Alignment:
| Q |
84 |
ttctggtgttatgacaatccgtagcttaagaaagcagaatacattttgtcaggaaaatattgacaaggtgaatgcaagtctaagaatggatttccataac |
183 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||| |||||| ||| |||||| |||||| ||||||||||||||||||||||||||| |||||| |
|
|
| T |
14300274 |
ttctggtgttatgacaatccgtagctcaagaaagcagaatgcattttctcaagaaaatgttgacagggtgaatgcaagtctaagaatggattttcataac |
14300175 |
T |
|
| Q |
184 |
aatggtgcaaatgaatggcttggttttcgtttagactataatggagttgttttcctttgcactgccaccctttttatgatctttttgccaagt |
276 |
Q |
| |
|
||||||||||||||||||||||||||||| || ||||||| ||||| ||||||||||| |||||| |||||||||||||||||||||||| |
|
|
| T |
14300174 |
aatggtgcaaatgaatggcttggttttcgcttggactatatgggagtgactttcctttgcattgccacgctttttatgatctttttgccaagt |
14300082 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 15909 times since January 2019
Visitors: 3757